Difference between revisions of "Calculating coverage"
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Revision as of 16:48, 28 June 2016
Introduction
Coverage can be calculated in several different ways and this pages aims to describe a few of them
Bedtools genomecov
This is one of the most commonly used methods and requires loading of the bedtools module. The base of the command is
bedtools genomecov -bga -ibam <bamfile>
