Difference between revisions of "Main Page"
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* [[samtools]] | * [[samtools]] | ||
* [[OrthoFinder]] | * [[OrthoFinder]] | ||
| − | + | * [[CAFE]] | |
= Queue Manager Tips = | = Queue Manager Tips = | ||
| − | A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to | + | A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with '''q''' and with '''qsub''' being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips: |
* [[Queue Manager Tips]] | * [[Queue Manager Tips]] | ||
Revision as of 14:01, 22 June 2016
Contents
Usage of Cluster
Programs
- BLAST
- blast2go: b2g4pipe
- diamond
- sra-tools
- kallisto
- python
- velvet
- srst2
- bowtie2
- stacks
- pyrad
- cd-hit
- SPAdes
- JBrowse
- PGAP
- ensembl
- MUMmer
- abacas
- prokka
- samtools
- OrthoFinder
- CAFE
Queue Manager Tips
A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:
