Difference between revisions of "GenomeTools"
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Its commands start with a '''gt''' and then a subcommand, such as '''gff3validator''' or '''sketch'''. | Its commands start with a '''gt''' and then a subcommand, such as '''gff3validator''' or '''sketch'''. | ||
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| + | = Tools = | ||
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| + | == Repfind == | ||
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| + | This is a Stefan Kurtz contribution, and can be found in the code under | ||
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| + | genometools-1.5.9/src/tools/gt_repfind.c | ||
Revision as of 11:05, 9 October 2017
Introduction
Typically use in conjunction with bedtools and bedops.
Includes AnnotationSketch, which is able to render a PNG image from a gff file.
Its commands start with a gt and then a subcommand, such as gff3validator or sketch.
Tools
Repfind
This is a Stefan Kurtz contribution, and can be found in the code under
genometools-1.5.9/src/tools/gt_repfind.c
