Difference between revisions of "Unicycler"
(Created page with "= Introduction = Assembles microbial genomes, like other tools, but with the differences that it handle different types of short and long reads so that it can make hybrid ass...") |
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so that it can make hybrid assemblies. | so that it can make hybrid assemblies. | ||
| − | The documentation | + | The documentation leaves some unanswered questiosn in terms of how to run the program. There are however some basic examples: |
| + | unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -l long_reads.fastq.gz -o output_dir | ||
| + | The question is, whether two sets of short reads can be combined in a single command line. | ||
= Links = | = Links = | ||
* [https://github.com/rrwick/Unicycler principle page] for the software. | * [https://github.com/rrwick/Unicycler principle page] for the software. | ||
Revision as of 14:15, 15 September 2017
Introduction
Assembles microbial genomes, like other tools, but with the differences that it handle different types of short and long reads so that it can make hybrid assemblies.
The documentation leaves some unanswered questiosn in terms of how to run the program. There are however some basic examples:
unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -l long_reads.fastq.gz -o output_dir
The question is, whether two sets of short reads can be combined in a single command line.
Links
- principle page for the software.
