Difference between revisions of "Blast"
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* 92600 transcripts (contigs) in 2.4 million line FASTA file. | * 92600 transcripts (contigs) in 2.4 million line FASTA file. | ||
| − | * blastx speed on 62-fragmented nr database: 5% | + | * blastx speed on 62-fragmented nr database: 5% (about 4500 contigs then) in 33 hours on blastx |
Revision as of 14:59, 1 February 2016
Introduction
The workhorse of bioinformatics, some tips on usage, and (mostly) how to speed it up
Benchmark Exercises
Transcriptome Panda Blood
- 92600 transcripts (contigs) in 2.4 million line FASTA file.
- blastx speed on 62-fragmented nr database: 5% (about 4500 contigs then) in 33 hours on blastx
