Difference between revisions of "Kallisto"
| Line 7: | Line 7: | ||
== Links == | == Links == | ||
* Kallisto's own getting started page at [https://pachterlab.github.io/kallisto/starting.html starting] | * Kallisto's own getting started page at [https://pachterlab.github.io/kallisto/starting.html starting] | ||
| − | * [https://benchtobioinformatics.wordpress.com/2015/07/10/using-kallisto-for-gene-expression-analysis-of-published-rnaseq-data benchtobioinformatics | + | * [https://benchtobioinformatics.wordpress.com/2015/07/10/using-kallisto-for-gene-expression-analysis-of-published-rnaseq-data benchtobioinformatics] |
* [http://andrewtmckenzie.com/2015/05/12/how-to-run-kallisto-on-ncbi-sra-rna-seq-data-for-differential-expression-using-the-mac-terminal Andrew MacKenzie] | * [http://andrewtmckenzie.com/2015/05/12/how-to-run-kallisto-on-ncbi-sra-rna-seq-data-for-differential-expression-using-the-mac-terminal Andrew MacKenzie] | ||
Revision as of 18:51, 23 March 2016
It's the new (2015) way of calculating gene expression abundance from NGS short reads
It calimms a large increase in speed by avoiding the normal alignment step
Using
Links
- Kallisto's own getting started page at starting
- benchtobioinformatics
- Andrew MacKenzie
