Difference between revisions of "Qiime2"
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source activate qiime2-2017.12 | source activate qiime2-2017.12 | ||
| − | What then happens is that "qiime2-2017.12" then appears in the user's prompt and this verfies that the | + | What then happens is that "qiime2-2017.12" then appears in the user's prompt and this verfies that the qiime2 environment has been activated, whether properly or improperly, remains to be seen. |
Revision as of 18:16, 29 January 2018
Introduction
This is a large, self-contained bioinformatics environment confected to tackle in particular microbiome studies.
Microbiome studies, do in fact pose special challenges, so the effort to cretae such a bioinformatitcs environment is jsutfied, but it does come at a cost of a certain unwieldiness in the software environment.
How to use
Qiime2 is installed within miniconda3 and this module must be loaded first:
module load miniconda3
After this the conda environment called "qiime2-2017.12" must be activated, this is done via:
source activate qiime2-2017.12
What then happens is that "qiime2-2017.12" then appears in the user's prompt and this verfies that the qiime2 environment has been activated, whether properly or improperly, remains to be seen.
