Difference between revisions of "Main Page"
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* [[STAR BEAST]] | * [[STAR BEAST]] | ||
* [[callSNPs.py]] | * [[callSNPs.py]] | ||
| + | * [[Edgen RNAseq]] | ||
==Protocols== | ==Protocols== | ||
Revision as of 22:09, 22 May 2016
Contents
Usage of Cluster
Programs
- BLAST
- blast2go: b2g4pipe
- diamond
- sra-tools
- kallisto
- python
- velvet
- srst2
- bowtie2
- stacks
- pyrad
- cd-hit
- SPAdes
- JBrowse
- PGAP
- ensembl
Queue Manager Tips
A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to manage such a system. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:
