Difference between revisions of "ChIP-Seq Top2 in Yeast"
| Line 34: | Line 34: | ||
=== First Experiment === | === First Experiment === | ||
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/ULSIP_E1_cad1tro_srtd_bamqc.html ULS1_IP_E1] |
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/ULSINP_E1_cad1tro_srtd_bamqc.html ULS1_INP_E1] |
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/WTIP_E1_cad1tro_srtd_bamqc.html WT_IP_E1] |
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/WTINP_E1_cad1tro_srtd_bamqc.html WT_INP_E1] |
=== Second Experiment === | === Second Experiment === | ||
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/ULS1_IP_cad1_srtd_bamqc.html ULS1_IP_E2] |
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/ULS1_INP_cad1_srtd_bamqc.html ULS1_INP_E2] |
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/WT_T2_IP_cad1_srtd_bamqc.html WT_T2_IP_E2] |
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/WT_T2_INP_cad1_srtd_bamqc.html WT_T2_INP_E2] |
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/ULS1_T2_IP_cad1_srtd_bamqc.html ULS1_T2_IP_E2] |
| − | * [http://stab.st-andrews.ac.uk/top2/ | + | * [http://stab.st-andrews.ac.uk/top2/bamquals2/ULS1_T2_INP_cad1_srtd_bamqc.html ULS1_T2_INP_E2] |
Revision as of 10:20, 8 August 2017
Contents
Introduction
This wiki page combines the two sequencing experiments of ChIP-Seq on yeast samples udring June / July 2017.
Sample quality
The MACS2 program takes care of duplicates so samples were only trimmed for adapters and quality.
