Difference between revisions of "ViennaRNA"
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= Introduction = | = Introduction = | ||
| − | Quite a large software package for dealing with RNA and RNA structure | + | Quite a large software package for dealing with RNA and RNA structure. |
| + | |||
| + | It is only available on the biotime machine. | ||
| + | |||
| + | = Executables = | ||
| + | |||
| + | Here are the executables that it installs: | ||
| + | |||
| + | * RNAfold | ||
| + | * RNAeval | ||
| + | * RNAheat | ||
| + | * RNApdist | ||
| + | * RNAdistance | ||
| + | * RNAinverse | ||
| + | * RNAplot | ||
| + | * RNAsubopt | ||
| + | * RNALfold | ||
| + | * RNAcofold | ||
| + | * RNApaln | ||
| + | * RNAduplex | ||
| + | * RNAalifold | ||
| + | * RNAplfold | ||
| + | * RNAup | ||
| + | * RNAaliduplex | ||
| + | * RNALalifold | ||
| + | * RNA2Dfold | ||
| + | * RNAparconv | ||
| + | * RNAPKplex | ||
| + | * RNAplex | ||
| + | * RNAsnoop | ||
| + | * RNApvmin | ||
| + | * b2ct | ||
| + | * popt | ||
| + | * ct2db | ||
| + | * Kinfold | ||
| + | * RNAforester | ||
| + | * RNAlocmin | ||
= Installation = | = Installation = | ||
ViennaRNA has a perl interface as well as a python interface for both pythons, version 2 and version 3. | ViennaRNA has a perl interface as well as a python interface for both pythons, version 2 and version 3. | ||
Latest revision as of 16:36, 5 October 2017
Introduction
Quite a large software package for dealing with RNA and RNA structure.
It is only available on the biotime machine.
Executables
Here are the executables that it installs:
- RNAfold
- RNAeval
- RNAheat
- RNApdist
- RNAdistance
- RNAinverse
- RNAplot
- RNAsubopt
- RNALfold
- RNAcofold
- RNApaln
- RNAduplex
- RNAalifold
- RNAplfold
- RNAup
- RNAaliduplex
- RNALalifold
- RNA2Dfold
- RNAparconv
- RNAPKplex
- RNAplex
- RNAsnoop
- RNApvmin
- b2ct
- popt
- ct2db
- Kinfold
- RNAforester
- RNAlocmin
Installation
ViennaRNA has a perl interface as well as a python interface for both pythons, version 2 and version 3.
