Difference between revisions of "Unicycler"
| Line 1: | Line 1: | ||
= Introduction = | = Introduction = | ||
| − | Assembles microbial genomes, like other tools, but with the differences that it | + | Assembles microbial genomes, like other tools, but with the differences that it handles different types of short and long reads |
so that it can make hybrid assemblies. | so that it can make hybrid assemblies. | ||
| Line 9: | Line 9: | ||
The question is, whether two sets of short reads can be combined in a single command line. | The question is, whether two sets of short reads can be combined in a single command line. | ||
| + | |||
| + | = To make note of = | ||
| + | * Unicycler uses python3 | ||
| + | |||
= Links = | = Links = | ||
* [https://github.com/rrwick/Unicycler principle page] for the software. | * [https://github.com/rrwick/Unicycler principle page] for the software. | ||
Latest revision as of 14:45, 15 September 2017
Introduction
Assembles microbial genomes, like other tools, but with the differences that it handles different types of short and long reads so that it can make hybrid assemblies.
The documentation leaves some unanswered questiosn in terms of how to run the program. There are however some basic examples:
unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -l long_reads.fastq.gz -o output_dir
The question is, whether two sets of short reads can be combined in a single command line.
To make note of
- Unicycler uses python3
Links
- principle page for the software.
