Difference between revisions of "Detonate"
| Line 8: | Line 8: | ||
* rsem-eval | * rsem-eval | ||
*# rsem-eval-calculate-score | *# rsem-eval-calculate-score | ||
| − | * | + | *# rsem-eval-estimate-transcript-length-distribution |
** rsem-plot-model | ** rsem-plot-model | ||
** rsem-build-read-index | ** rsem-build-read-index | ||
Revision as of 12:22, 30 January 2017
Introduction
Quality evaulation of a de-novo transcriptome assembly from the creators of RSEM (Deweylab).
Layout
Two main aspects to this program. Also included here are the executables associated
- rsem-eval
- rsem-eval-calculate-score
- rsem-eval-estimate-transcript-length-distribution
- rsem-plot-model
- rsem-build-read-index
- rsem-eval-run-em
- rsem-extract-reference-transcripts
- rsem-parse-alignments
- rsem-preref
- rsem-sam-validator
- rsem-scan-for-paired-end-reads
- rsem-simulate-reads
- ref-eval
