Difference between revisions of "Main Page"
| Line 29: | Line 29: | ||
* [[multiqc]] | * [[multiqc]] | ||
* [[BamQC]] | * [[BamQC]] | ||
| + | * [[abacas]] | ||
| + | * [[BamQC]] | ||
| + | * [[BLAST]] | ||
| + | * [[blast2go: b2g4pipe]] | ||
| + | * [[bowtie2]] | ||
| + | * [[CAFE]] | ||
| + | * [[cd-hit]] | ||
| + | * [[diamond]] | ||
| + | * [[ensembl]] | ||
| + | * [[JBrowse]] | ||
| + | * [[kallisto]] | ||
| + | * [[multiqc]] | ||
| + | * [[MUMmer]] | ||
| + | * [[OrthoFinder]] | ||
| + | * [[PGAP]] | ||
| + | * [[prokka]] | ||
| + | * [[pyrad]] | ||
| + | * [[python]] | ||
| + | * [[samtools]] | ||
| + | * [[SPAdes]] | ||
| + | * [[SPAdes]] | ||
| + | * [[sra-tools]] | ||
| + | * [[srst2]] | ||
| + | * [[stacks]] | ||
| + | * [[velvet]] | ||
= Queue Manager Tips = | = Queue Manager Tips = | ||
Revision as of 13:17, 27 June 2016
Contents
Usage of Cluster
Programs
- BLAST
- blast2go: b2g4pipe
- diamond
- sra-tools
- kallisto
- python
- velvet
- srst2
- bowtie2
- stacks
- pyrad
- cd-hit
- SPAdes
- JBrowse
- PGAP
- ensembl
- MUMmer
- abacas
- prokka
- samtools
- OrthoFinder
- CAFE
- SPAdes
- multiqc
- BamQC
- abacas
- BamQC
- BLAST
- blast2go: b2g4pipe
- bowtie2
- CAFE
- cd-hit
- diamond
- ensembl
- JBrowse
- kallisto
- multiqc
- MUMmer
- OrthoFinder
- PGAP
- prokka
- pyrad
- python
- samtools
- SPAdes
- SPAdes
- sra-tools
- srst2
- stacks
- velvet
Queue Manager Tips
A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:
