Difference between revisions of "Singularity with grid engine"
(Created page with "JW may 2019 Followed guide here: https://blogs.univa.com/2019/01/using-univa-grid-engine-with-singularity/ Pete installed singularity on phylo now a requestable resource...") |
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Example: | Example: | ||
qsub -l singularity -b y singularity run ubuntu.sif ./test_script.sh | qsub -l singularity -b y singularity run ubuntu.sif ./test_script.sh | ||
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| + | To add another node with singularity on: | ||
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| + | qconf -me <nodename> | ||
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| + | On the complex_values line remove NONE if present, and add "singularity=TRUE" | ||
Revision as of 11:42, 23 May 2019
JW may 2019
Followed guide here: https://blogs.univa.com/2019/01/using-univa-grid-engine-with-singularity/
Pete installed singularity on phylo
now a requestable resource with "-l singularity" to make sure you get a node with singularity on
Example:
qsub -l singularity -b y singularity run ubuntu.sif ./test_script.sh
To add another node with singularity on:
qconf -me <nodename>
On the complex_values line remove NONE if present, and add "singularity=TRUE"
