Difference between revisions of "Ensembl"
(Created page with "= Introduction = Ensembl produces a range of utilities and tools, most especially, an API. It is mostly a perl endeavour, though a RESTful API is alsof available, although t...") |
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* ensembl-io | * ensembl-io | ||
* ensembl-variation | * ensembl-variation | ||
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| + | The '''ensembl-tools''' is not retrieved. | ||
| + | |||
| + | == ensembl == | ||
| + | |||
| + | This poorly named componenet can be referred to as core. | ||
| + | |||
| + | ==ensembl-tools == | ||
| + | |||
| + | This component contains: | ||
| + | * assembly-converter | ||
| + | * id_history_converter | ||
| + | * region_reporter | ||
| + | * variant_effect_predictor | ||
| + | |||
| + | == em | ||
Revision as of 13:39, 11 May 2016
Introduction
Ensembl produces a range of utilities and tools, most especially, an API.
It is mostly a perl endeavour, though a RESTful API is alsof available, although this newer and quite possibly not as powerful as the historical perl installation.
Components
ensembl-git-tools
Seemingly just a tool set to enable downloading (i.e not even installation) of the other tools. Merely amount to beign able to execute the following
git ensembl --clone api
This will clone the following:
- ensembl
- ensembl-compara
- ensembl-fncgen
- ensembl-io
- ensembl-variation
The ensembl-tools is not retrieved.
ensembl
This poorly named componenet can be referred to as core.
ensembl-tools
This component contains:
- assembly-converter
- id_history_converter
- region_reporter
- variant_effect_predictor
== em
