Difference between revisions of "ChIP-Seq Top2 peak-calling"
(Created page with "= Introduction = = Raw data description = = Raw dataset quality analysis = Using FASTQC and them MultiQC. Results linked [http:stab.st-andrews.ac.uk/stab/top2/fastqc.html...") |
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= Introduction = | = Introduction = | ||
| + | ChIP-Seq on Mutant vs. Wildtype, two states, 4 sets of of pairs each, for a total of 16 pairs of paired-end datasets. | ||
= Raw data description = | = Raw data description = | ||
| + | |||
| + | Mutant: | ||
| + | ULS1INP_S6_L001_R1_001.fastq.gz | ||
| + | ULS1INP_S6_L001_R2_001.fastq.gz | ||
| + | ULS1INP_S6_L002_R1_001.fastq.gz | ||
| + | ULS1INP_S6_L002_R2_001.fastq.gz | ||
| + | ULS1INP_S6_L003_R1_001.fastq.gz | ||
| + | ULS1INP_S6_L003_R2_001.fastq.gz | ||
| + | ULS1INP_S6_L004_R1_001.fastq.gz | ||
| + | ULS1INP_S6_L004_R2_001.fastq.gz | ||
| + | USL1IP_S7_L001_R1_001.fastq.gz | ||
| + | USL1IP_S7_L001_R2_001.fastq.gz | ||
| + | USL1IP_S7_L002_R1_001.fastq.gz | ||
| + | USL1IP_S7_L002_R2_001.fastq.gz | ||
| + | USL1IP_S7_L003_R1_001.fastq.gz | ||
| + | USL1IP_S7_L003_R2_001.fastq.gz | ||
| + | USL1IP_S7_L004_R1_001.fastq.gz | ||
| + | USL1IP_S7_L004_R2_001.fastq.gz | ||
| + | |||
| + | Wildtype: | ||
| + | WTINP_S4_L001_R1_001.fastq.gz | ||
| + | WTINP_S4_L001_R2_001.fastq.gz | ||
| + | WTINP_S4_L002_R1_001.fastq.gz | ||
| + | WTINP_S4_L002_R2_001.fastq.gz | ||
| + | WTINP_S4_L003_R1_001.fastq.gz | ||
| + | WTINP_S4_L003_R2_001.fastq.gz | ||
| + | WTINP_S4_L004_R1_001.fastq.gz | ||
| + | WTINP_S4_L004_R2_001.fastq.gz | ||
| + | WTIP_S5_L001_R1_001.fastq.gz | ||
| + | WTIP_S5_L001_R2_001.fastq.gz | ||
| + | WTIP_S5_L002_R1_001.fastq.gz | ||
| + | WTIP_S5_L002_R2_001.fastq.gz | ||
| + | WTIP_S5_L003_R1_001.fastq.gz | ||
| + | WTIP_S5_L003_R2_001.fastq.gz | ||
| + | WTIP_S5_L004_R1_001.fastq.gz | ||
| + | WTIP_S5_L004_R2_001.fastq.gz | ||
= Raw dataset quality analysis = | = Raw dataset quality analysis = | ||
| Line 8: | Line 45: | ||
Using FASTQC and them MultiQC. | Using FASTQC and them MultiQC. | ||
| − | Results linked [http:stab.st-andrews.ac.uk/stab/top2/fastqc.html here]. | + | Results linked [[http:stab.st-andrews.ac.uk/stab/top2/fastqc.html here]]. |
= Papers = | = Papers = | ||
Revision as of 13:54, 30 May 2017
Introduction
ChIP-Seq on Mutant vs. Wildtype, two states, 4 sets of of pairs each, for a total of 16 pairs of paired-end datasets.
Raw data description
Mutant:
ULS1INP_S6_L001_R1_001.fastq.gz ULS1INP_S6_L001_R2_001.fastq.gz ULS1INP_S6_L002_R1_001.fastq.gz ULS1INP_S6_L002_R2_001.fastq.gz ULS1INP_S6_L003_R1_001.fastq.gz ULS1INP_S6_L003_R2_001.fastq.gz ULS1INP_S6_L004_R1_001.fastq.gz ULS1INP_S6_L004_R2_001.fastq.gz USL1IP_S7_L001_R1_001.fastq.gz USL1IP_S7_L001_R2_001.fastq.gz USL1IP_S7_L002_R1_001.fastq.gz USL1IP_S7_L002_R2_001.fastq.gz USL1IP_S7_L003_R1_001.fastq.gz USL1IP_S7_L003_R2_001.fastq.gz USL1IP_S7_L004_R1_001.fastq.gz USL1IP_S7_L004_R2_001.fastq.gz
Wildtype:
WTINP_S4_L001_R1_001.fastq.gz WTINP_S4_L001_R2_001.fastq.gz WTINP_S4_L002_R1_001.fastq.gz WTINP_S4_L002_R2_001.fastq.gz WTINP_S4_L003_R1_001.fastq.gz WTINP_S4_L003_R2_001.fastq.gz WTINP_S4_L004_R1_001.fastq.gz WTINP_S4_L004_R2_001.fastq.gz WTIP_S5_L001_R1_001.fastq.gz WTIP_S5_L001_R2_001.fastq.gz WTIP_S5_L002_R1_001.fastq.gz WTIP_S5_L002_R2_001.fastq.gz WTIP_S5_L003_R1_001.fastq.gz WTIP_S5_L003_R2_001.fastq.gz WTIP_S5_L004_R1_001.fastq.gz WTIP_S5_L004_R2_001.fastq.gz
Raw dataset quality analysis
Using FASTQC and them MultiQC.
Results linked http:stab.st-andrews.ac.uk/stab/top2/fastqc.html here.
