Difference between revisions of "Blast"
(Created page with "=Introduction= The workhorse of bioinformatics, some tips on usgae, and (mostly) how to speed it up = Benchmark Exercises = == Transcriptome Panda Blood == * 92600 transcri...") |
|||
| Line 1: | Line 1: | ||
=Introduction= | =Introduction= | ||
| − | The workhorse of bioinformatics, some tips on | + | The workhorse of bioinformatics, some tips on usage, and (mostly) how to speed it up |
= Benchmark Exercises = | = Benchmark Exercises = | ||
Revision as of 14:46, 1 February 2016
Introduction
The workhorse of bioinformatics, some tips on usage, and (mostly) how to speed it up
Benchmark Exercises
Transcriptome Panda Blood
- 92600 transcripts (contigs) in 2.4 million line FASTA file.
- blastx speed on 62-fragmented nr database: 5% of contigs in 33 hours on blastx
