SNP Analysis and phylogenetics - Revision history

Rf at 14:23, 4 July 2017

2017-07-04T14:23:01Z

2017-07-04T13:47:01Z

2017-07-04T13:35:58Z

2017-07-04T13:19:26Z

2017-07-04T13:10:36Z

Created page with " = Links = == Andrew Rambaut = [https://groups.google.com/forum/#!topic/beast-users/V5vRghILMfw Says] that"

New page

= Links =

== Andrew Rambaut =

[https://groups.google.com/forum/#!topic/beast-users/V5vRghILMfw Says] that

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 When constructing trees from SNP analyses, what we have is an account of variant sites only.
-= Links =
+= Relevant Links =
 == Andrew Rambaut suggestion==
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 Where [http://seqanswers.com/forums/archive/index.php/t-18556.html it] mentions that the tree topology will probably be coorect, but that the branch lengths may be unreliable and most likely on the long side.

← Older revision		Revision as of 13:47, 4 July 2017
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	Is to introduce the number of invariant sites in the shape of counts for each of the four bases. His post is [https://groups.google.com/forum/#!topic/beast-users/V5vRghILMfw here].		Is to introduce the number of invariant sites in the shape of counts for each of the four bases. His post is [https://groups.google.com/forum/#!topic/beast-users/V5vRghILMfw here].
		+
		+	== Seqanswers thread ==
		+
		+	Where [http://seqanswers.com/forums/archive/index.php/t-18556.html it] mentions that the tree topology will probably be coorect, but that the branch lengths may be unreliable and most likely on the long side.

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 = Introduction =
-Phylogenies have typically be inferred from gene sequences where both variant AND invariant sites are included.
+Phylogenies have typically be inferred from gene sequences where both variant AND invariant sites are included and this is very useful for the issue of branch length estimation.
 When constructing trees from SNP analyses, what we have is an account of variant sites only.