Perl - Revision history

Rf at 12:36, 5 October 2017

2017-10-05T12:36:20Z

Rf at 12:35, 5 October 2017

2017-10-05T12:35:16Z

Rf at 12:09, 5 October 2017

2017-10-05T12:09:47Z

Rf at 12:08, 5 October 2017

2017-10-05T12:08:16Z

Rf at 11:17, 5 October 2017

2017-10-05T11:17:04Z

Rf at 11:16, 5 October 2017

2017-10-05T11:16:32Z

Rf: Created page with "= Introduction = Quite a large software package for dealing with RNA and RNA structure = Installation = New versions of perl follow this configuraion before compiling sh..."

2017-10-05T11:08:47Z

Created page with "= Introduction = Quite a large software package for dealing with RNA and RNA structure = Installation = New versions of perl follow this configuraion before compiling sh..."

New page

= Introduction =

Quite a large software package for dealing with RNA and RNA structure

= Installation =

New versions of perl follow this configuraion before compiling

sh Configure -de -Dprefix=/shelf/modulefiles/tools/perl/5.26.1 -Dusesheplib

As well as installing in the right place, it will also create the perl shared library, which other programs, those who like to sport perl interfaces, might like to use.

@@ Line 10: / Line 10: @@
 Then to keep account of the modules you have, you can use
   cpan -l
-This is useful when you have one perl installation in which you have gradually installed many modules and, when installing a new version of perl, you want o install all of these in one go by piping to cpanm. However, bear in mind when you do this, that many modules may need special libraries and there could be very many failures. Nevertheless this method will still install a good deal fo the libraries that otherewise would be tedious to install one by one.
+This is useful when you have one perl installation in which you have gradually installed many modules and, when installing a new version of perl, you want o install all of these in one go by piping to cpanm. However, bear in mind when you do this, that many modules may need special libraries and there could be very many failures. Nevertheless this method will still install a good deal of the libraries that otherwise would be tedious to install one by one.
 And then to actually install the outdated modules, you first have to

@@ Line 10: / Line 10: @@
 Then to keep account of the modules you have, you can use
   cpan -l
 And then to actually install the outdated modules, you first have to

← Older revision		Revision as of 12:09, 5 October 2017
Line 12:		Line 12:

	And then to actually install the outdated modules, you first have to		And then to actually install the outdated modules, you first have to
		+	cpanm App::cpanoutdated

	and then		and then

← Older revision		Revision as of 12:08, 5 October 2017
Line 2:		Line 2:

	Perl has been one of the cornerstones of bioinformatics and is unlikely to give up this role, simply because so many user-contributed modules are avaiable for it.		Perl has been one of the cornerstones of bioinformatics and is unlikely to give up this role, simply because so many user-contributed modules are avaiable for it.
		+
		+	= Best way to install modules =
		+
		+	This clearly cpanm, but it has be installed first. However, this is remarkably easy and does not need the clunky cpan interface:
		+	curl -L https://cpanmin.us \| perl - --sudo App::cpanminus
		+
		+	Then to keep account of the modules you have, you can use
		+	cpan -l
		+
		+	And then to actually install the outdated modules, you first have to
		+
		+	and then
		+	cpan-outdated -p \| cpanm
		+
		+

	= Installation =		= Installation =

@@ Line 7: / Line 7: @@
 New versions of perl follow this configuration before compiling
-  sh Configure -de -Dprefix=/shelf/modulefiles/tools/perl/5.26.1 -Dusesheplib
+  sh Configure -de -Dprefix=/shelf/modulefiles/tools/perl/5.26.1 -Duseshrplib
 As well as installing in the right place, it will also create the perl shared library, which other programs, those who like to sport perl interfaces, might like to use.

@@ Line 1: / Line 1: @@
 = Introduction =
-Quite a large software package for dealing with RNA and RNA structure
+Perl has been one of the cornerstones of bioinformatics and is unlikely to give up this role, simply because so many user-contributed modules are avaiable for it.
 = Installation =
-New versions of perl follow this configuraion before compiling
+New versions of perl follow this configuration before compiling
   sh Configure -de -Dprefix=/shelf/modulefiles/tools/perl/5.26.1 -Dusesheplib
 As well as installing in the right place, it will also create the perl shared library, which other programs, those who like to sport perl interfaces, might like to use.