MinKNOW folders and log files - Revision history

Rf at 12:15, 14 March 2017

2017-03-14T12:15:42Z

Rf at 12:15, 14 March 2017

2017-03-14T12:15:09Z

Rf at 12:05, 14 March 2017

2017-03-14T12:05:38Z

Rf at 11:42, 14 March 2017

2017-03-14T11:42:24Z

Rf: Created page with "= Introduction = The way The MinKNOW program organises folder, and the makeup of its various log files is complicated. This page is an attempt to keep track of them = Folde..."

2017-03-14T11:41:41Z

Created page with "= Introduction = The way The MinKNOW program organises folder, and the makeup of its various log files is complicated. This page is an attempt to keep track of them = Folde..."

New page

= Introduction =

The way The MinKNOW program organises folder, and the makeup of its various log files is complicated.

This page is an attempt to keep track of them

= Folders =

* The root folder is usually called '''data'''.

= Log files =

Found in:

<ROOT_FOLDER>/logs/<MN12345>/

The log files seem to have prefixes that reflect their type. One set of log files could look like:
* ws_event_sampler_*
* control_server_*
* ws_raw_data_sampler_*
* read_writer_*
* ws_longpoll_*
* analyser_*
* bulk_writer_*
* manta_*
* Script_events_*

These file

@@ Line 12: / Line 12: @@
 * At this ealy stage FAST5 files contain signal and events, but the bases are not called, so there is no DNA yet.
 * Within '''reads''', MinKNOW separates reads into
-:- pass
+:- '''pass'''
-:- fail
+:- '''fail'''
-:- skip
+:- '''skip'''
-:- tmp
+:- '''tmp'''
 = Log files =

@@ Line 9: / Line 9: @@
 * The root folder is usually called '''data'''.
 * MinKNOW deposits log files in the root folder, but uses a subfolder called '''reads''' for the FAST5 files.
 * Within '''reads''', MinKNOW separates reads into
 :- pass

← Older revision		Revision as of 12:05, 14 March 2017
Line 8:		Line 8:

	* The root folder is usually called '''data'''.		* The root folder is usually called '''data'''.
		+	* MinKNOW deposits log files in the root folder, but uses a subfolder called '''reads''' for the FAST5 files.
		+	* Within '''reads''', MinKNOW separates reads into
		+	:- pass
		+	:- fail
		+	:- skip
		+	:- tmp

	= Log files =		= Log files =

← Older revision		Revision as of 11:42, 14 March 2017
Line 26:		Line 26:
	* Script_events_*		* Script_events_*

−	These ~~file~~	+	These files usually have the date and time added to their name and all have extension '''txt'''.