http://stab.st-andrews.ac.uk/wiki/index.php?action=history&feed=atom&title=KentUtils 2026-05-23T15:06:43Z Revision history for this page on the wiki MediaWiki 1.30.0 http://stab.st-andrews.ac.uk/wiki/index.php?title=KentUtils&diff=1765&oldid=prev 2017-06-15T14:05:53Z

<p>Created page with &quot;= Introduction = A myriad of bioinformatics tools from Jim Kent = The tools = addCols bedGraphToBigWig bigWigCorrelate chainStitchId faCmp...&quot;</p> <p><b>New page</b></p><div>= Introduction =<br /> A myriad of bioinformatics tools from Jim Kent<br /> <br /> = The tools =<br /> <br /> addCols bedGraphToBigWig bigWigCorrelate chainStitchId faCmp featureBits hgFindSpec linesToRa mafToAxt paraFetch pslSort spacedToTab validateFiles<br /> ameme bedIntersect bigWigInfo chainSwap faCount fetchChromSizes hgGcPercent localtime mafToPsl paraSync pslStats splitFile validateManifest<br /> autoDtd bedItemOverlapCount bigWigMerge chainToAxt faFilter findMotif hgLoadBed mafAddIRows makeTableList positionalTblCheck pslSwap splitFileByColumn wigCorrelate<br /> autoSql bedPileUps bigWigSummary chainToPsl faFilterN gapToLift hgLoadOut mafAddQRows maskOutFa pslCat pslToBed sqlToXml wigEncode<br /> autoXml bedRemoveOverlap bigWigToBedGraph checkAgpAndFa faFrag genePredCheck hgLoadWiggle mafCoverage mktime pslCDnaFilter pslToChain stringify wigToBigWig<br /> ave bedRestrictToPositions bigWigToWig checkCoverageGaps faNoise genePredHisto hgsql mafFetch mrnaToGene pslCheck pslToPslx subChar wordLine<br /> aveCols bedSort blastToPsl checkHgFindSpec faOneRecord genePredSingleCover hgsqldump mafFilter netChainSubset pslDropOverlap pslxToFa subColumn xmlCat<br /> axtChain bedToBigBed blastXmlToPsl checkTableCoords faPolyASizes genePredToBed hgTrackDb mafFrag netClass pslFilter qacAgpLift tailLines xmlToSql<br /> axtSort bedToExons calc chopFaLines faRandomize genePredToFakePsl hgWiggle mafFrags netFilter pslHisto qacToQa tdbQuery<br /> axtSwap bedToGenePred catDir chromGraphFromBin faRc genePredToGtf htmlCheck mafGene netSplit pslLiftSubrangeBlat qacToWig textHistogram<br /> axtToMaf bedToPsl catUncomment chromGraphToBin faSize genePredToMafFrames hubCheck mafMeFirst netSyntenic pslMap qaToQac tickToDate<br /> axtToPsl bedWeedOverlapping chainAntiRepeat colTransform faSomeRecords gfClient ixIxx mafOrder netToAxt pslMrnaCover randomLines toLower<br /> bedClip bigBedInfo chainFilter countChars faSplit gff3ToGenePred lavToAxt mafRanges netToBed pslPairs raSqlQuery toUpper<br /> bedCommonRegions bigBedNamedItems chainMergeSort crTreeIndexBed fastqToFa gff3ToPsl lavToPsl mafsInRegion newProg pslPartition raToLines trfBig<br /> bedCoverage bigBedSummary chainNet crTreeSearchBed faToFastq gfServer ldHgGene mafSpeciesList nibFrag pslPretty raToTab twoBitDup<br /> bedExtendRanges bigBedToBed chainPreNet dbSnoop faToTab gmtime liftOver mafSpeciesSubset nibSize pslRecalcMatch rmFaDups twoBitInfo<br /> bedGeneParts bigWigAverageOverBed chainSort dbTrash faToTwoBit gtfToGenePred liftOverMerge mafSplit oligoMatch pslReps rowsToCols twoBitMask<br /> bedGraphPack bigWigCat chainSplit estOrient faTrans headRest liftUp mafSplitPos overlapSelect pslSelect sizeof twoBitToFa</div>

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