GenomeTools - Revision history

Rf at 15:49, 9 October 2017

2017-10-09T15:49:07Z

Rf at 12:31, 9 October 2017

2017-10-09T12:31:42Z

Rf at 10:05, 9 October 2017

2017-10-09T10:05:35Z

Rf at 14:00, 15 March 2017

2017-03-15T14:00:56Z

Rf: Created page with "= Introduction = Typically use in conjunction with bedtools and bedops. Includes AnnotationSketch, which is able to render a PNG image from a gff file"

2017-03-13T12:59:55Z

Created page with "= Introduction = Typically use in conjunction with bedtools and bedops. Includes AnnotationSketch, which is able to render a PNG image from a gff file"

New page

= Introduction =

Typically use in conjunction with bedtools and bedops.

Includes AnnotationSketch, which is able to render a PNG image from a gff file

@@ Line 22: / Line 22: @@
 Despite the -r may be meaning reverse, as in reverse strand here, it is not. It actually refers to the same strand, but in the reverse reading direction,
 which seems futile. For reading the reverse strand, -p is required.
 This is a Stefan Kurtz contribution, and can be found in the code under
   genometools-1.5.9/src/tools/gt_repfind.c

@@ Line 11: / Line 11: @@
 == Repfind ==
 This is a Stefan Kurtz contribution, and can be found in the code under
   genometools-1.5.9/src/tools/gt_repfind.c

← Older revision		Revision as of 10:05, 9 October 2017
Line 6:		Line 6:

	Its commands start with a '''gt''' and then a subcommand, such as '''gff3validator''' or '''sketch'''.		Its commands start with a '''gt''' and then a subcommand, such as '''gff3validator''' or '''sketch'''.
		+
		+
		+	= Tools =
		+
		+	== Repfind ==
		+
		+	This is a Stefan Kurtz contribution, and can be found in the code under
		+
		+	genometools-1.5.9/src/tools/gt_repfind.c

← Older revision		Revision as of 14:00, 15 March 2017
Line 3:		Line 3:
	Typically use in conjunction with bedtools and bedops.		Typically use in conjunction with bedtools and bedops.

−	Includes AnnotationSketch, which is able to render a PNG image from a gff file	+	Includes AnnotationSketch, which is able to render a PNG image from a gff file.
		+
		+	Its commands start with a '''gt''' and then a subcommand, such as '''gff3validator''' or '''sketch'''.