User contributions
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- 16:31, 12 May 2016 (diff | hist) . . (+18) . . CallSNPs.py
- 16:30, 12 May 2016 (diff | hist) . . (+91) . . CallSNPs.py
- 16:11, 12 May 2016 (diff | hist) . . (+38) . . Two Eel Scaffolds
- 16:10, 12 May 2016 (diff | hist) . . (+61) . . Two Eel Scaffolds
- 16:09, 12 May 2016 (diff | hist) . . (+132) . . Two Eel Scaffolds
- 15:21, 12 May 2016 (diff | hist) . . (+346) . . Two Eel Scaffolds
- 15:15, 12 May 2016 (diff | hist) . . (+682) . . N Two Eel Scaffolds (Created page with "= Introduction = Two DNA scaffolds are presented: # '''eelScaffold32'''. 679 422 bp and 42.25% GC. # '''eelScaffold320'''. 246 433 bp and 43.47% GC. In terms special geens o...")
- 14:31, 12 May 2016 (diff | hist) . . (+44) . . Main Page
- 13:54, 12 May 2016 (diff | hist) . . (+1) . . Ensembl (current)
- 13:51, 12 May 2016 (diff | hist) . . (+157) . . Ensembl
- 13:47, 12 May 2016 (diff | hist) . . (+178) . . Ensembl (→Variant Effect Predictor)
- 13:33, 12 May 2016 (diff | hist) . . (+4,033) . . Ensembl (→Variant Effect Predictor)
- 12:28, 12 May 2016 (diff | hist) . . (+1) . . Admin Tips (→Simple commands on all nodes, giving node name)
- 12:28, 12 May 2016 (diff | hist) . . (+52) . . Admin Tips
- 12:27, 12 May 2016 (diff | hist) . . (+125) . . N Admin Tips (Created page with " ==Simple commands on all nodes, giving node name == for i in node{1..10}; do ssh $i 'echo -n "$HOSTNAME: "; uname -a';done")
- 12:26, 12 May 2016 (diff | hist) . . (+17) . . Main Page
- 17:07, 11 May 2016 (diff | hist) . . (+224) . . Ensembl
- 15:23, 11 May 2016 (diff | hist) . . (+222) . . Ensembl
- 15:00, 11 May 2016 (diff | hist) . . (+72) . . Ensembl
- 14:42, 11 May 2016 (diff | hist) . . (+75) . . Ensembl
- 14:39, 11 May 2016 (diff | hist) . . (-7) . . Ensembl
- 14:39, 11 May 2016 (diff | hist) . . (+258) . . Ensembl
- 14:36, 11 May 2016 (diff | hist) . . (+585) . . N Ensembl (Created page with "= Introduction = Ensembl produces a range of utilities and tools, most especially, an API. It is mostly a perl endeavour, though a RESTful API is alsof available, although t...")
- 14:30, 11 May 2016 (diff | hist) . . (+15) . . Main Page
- 16:07, 10 May 2016 (diff | hist) . . (+492) . . Stacks
- 16:07, 10 May 2016 (diff | hist) . . (-493) . . SPAdes
- 16:07, 10 May 2016 (diff | hist) . . (+93) . . SPAdes
- 16:06, 10 May 2016 (diff | hist) . . (+400) . . SPAdes
- 15:19, 10 May 2016 (diff | hist) . . (+89) . . SPAdes
- 15:17, 10 May 2016 (diff | hist) . . (+557) . . SPAdes
- 14:20, 10 May 2016 (diff | hist) . . (+389) . . SPAdes
- 18:19, 9 May 2016 (diff | hist) . . (+110) . . RedHat (→Installation of devtoolset-2)
- 17:59, 9 May 2016 (diff | hist) . . (+47) . . RedHat
- 17:57, 9 May 2016 (diff | hist) . . (+506) . . RedHat (→Installation of devtoolset-2)
- 17:42, 9 May 2016 (diff | hist) . . (+308) . . RedHat
- 17:39, 9 May 2016 (diff | hist) . . (0) . . RedHat
- 17:39, 9 May 2016 (diff | hist) . . (+54) . . RedHat
- 17:38, 9 May 2016 (diff | hist) . . (0) . . RedHat
- 17:09, 9 May 2016 (diff | hist) . . (+148) . . N RedHat (Created page with "StAB subscribes to Red Hat = outdated repomd.xml warnings= You can get rid of them (i.e. updaet the repond.xml) by: yum clean all yum update yum*")
- 17:00, 9 May 2016 (diff | hist) . . (+13) . . Main Page
- 16:09, 9 May 2016 (diff | hist) . . (+8) . . Stacks
- 15:59, 9 May 2016 (diff | hist) . . (+136) . . Stacks
- 15:57, 9 May 2016 (diff | hist) . . (+187) . . Stacks
- 15:51, 9 May 2016 (diff | hist) . . (+154) . . Stacks
- 17:52, 6 May 2016 (diff | hist) . . (+89) . . PGAP (current)
- 17:48, 6 May 2016 (diff | hist) . . (+345) . . PGAP
- 17:00, 6 May 2016 (diff | hist) . . (+236) . . PGAP
- 16:46, 6 May 2016 (diff | hist) . . (+150) . . PGAP (→Step 3 Running PGAP)
- 16:40, 6 May 2016 (diff | hist) . . (+390) . . N PGAP (Created page with "= Introduction = = Usage = == Step 3 Running PGAP == For PAGP, there are five functional modules: * cluster analysis of functional genes * pan-genome profile analysis * ge...")
- 16:39, 6 May 2016 (diff | hist) . . (+11) . . Main Page
- 15:03, 5 May 2016 (diff | hist) . . (-12) . . Main Page
- 15:03, 5 May 2016 (diff | hist) . . (+12) . . Main Page
- 23:54, 4 May 2016 (diff | hist) . . (+209) . . JBrowse
- 23:52, 4 May 2016 (diff | hist) . . (+613) . . N JBrowse (Created page with "=Introduction= Quick Javascript based Genome Viewer = Using = Like other browsers, JBrowse simply gives a visual way of navigating a set of sequences. * Beside the magnify...")
- 23:45, 4 May 2016 (diff | hist) . . (+14) . . Main Page
- 15:24, 4 May 2016 (diff | hist) . . (+194) . . SPAdes
- 15:20, 4 May 2016 (diff | hist) . . (+34) . . N SPAdes (Created page with "= Introduction = Pavel Pevzsner's")
- 14:54, 4 May 2016 (diff | hist) . . (+13) . . Main Page
- 16:23, 1 May 2016 (diff | hist) . . (+637) . . N Cd-hit (Created page with "=Introduction= CD-HIT is primarily a clustering program which, for input, takes fasta sequence files which are being envisioned as databases against which query sequence file...") (current)
- 14:12, 1 May 2016 (diff | hist) . . (+13) . . Main Page
- 17:08, 29 April 2016 (diff | hist) . . (+140) . . Srst2
- 17:05, 29 April 2016 (diff | hist) . . (+197) . . Srst2
- 16:20, 29 April 2016 (diff | hist) . . (+403) . . N Queue Manager Tips (Created page with "= Pipe a jobscript to '''qsub'''= echo -e 'date; sleep 2; date' | qsub -cwd -j y -V -S /bin/bash -q all.q -N pipetest This will send a string with the command date, followe...")
- 16:13, 29 April 2016 (diff | hist) . . (+473) . . Main Page
- 15:14, 29 April 2016 (diff | hist) . . (+73) . . Srst2
- 15:11, 29 April 2016 (diff | hist) . . (+800) . . Srst2
- 14:58, 29 April 2016 (diff | hist) . . (+108) . . Srst2
- 14:57, 29 April 2016 (diff | hist) . . (+3) . . Srst2
- 14:55, 29 April 2016 (diff | hist) . . (+81) . . Srst2
- 14:49, 29 April 2016 (diff | hist) . . (+151) . . Srst2
- 14:46, 29 April 2016 (diff | hist) . . (+82) . . Srst2
- 14:44, 29 April 2016 (diff | hist) . . (+7) . . Srst2
- 14:35, 29 April 2016 (diff | hist) . . (+27) . . Srst2
- 14:33, 29 April 2016 (diff | hist) . . (+68) . . Srst2
- 14:26, 29 April 2016 (diff | hist) . . (+69) . . Srst2
- 14:25, 29 April 2016 (diff | hist) . . (+185) . . Srst2
- 14:08, 29 April 2016 (diff | hist) . . (+157) . . Srst2
- 13:32, 29 April 2016 (diff | hist) . . (+491) . . Srst2
- 17:25, 28 April 2016 (diff | hist) . . (+48) . . Srst2
- 17:22, 28 April 2016 (diff | hist) . . (+459) . . Srst2
- 17:16, 28 April 2016 (diff | hist) . . (+138) . . Srst2
- 17:09, 28 April 2016 (diff | hist) . . (+228) . . Srst2
- 17:05, 28 April 2016 (diff | hist) . . (+70) . . Srst2
- 17:03, 28 April 2016 (diff | hist) . . (+2) . . Srst2
- 17:01, 28 April 2016 (diff | hist) . . (+442) . . Srst2
- 16:35, 28 April 2016 (diff | hist) . . (+68) . . Srst2
- 16:20, 28 April 2016 (diff | hist) . . (+489) . . Srst2
- 15:35, 28 April 2016 (diff | hist) . . (+82) . . Srst2
- 15:22, 28 April 2016 (diff | hist) . . (+255) . . Srst2
- 15:12, 28 April 2016 (diff | hist) . . (+88) . . Srst2
- 15:11, 28 April 2016 (diff | hist) . . (+290) . . Srst2
- 17:53, 27 April 2016 (diff | hist) . . (+202) . . Srst2
- 17:48, 27 April 2016 (diff | hist) . . (+172) . . Srst2
- 11:34, 21 April 2016 (diff | hist) . . (+299) . . Diamond
- 18:39, 20 April 2016 (diff | hist) . . (+189) . . Pyrad (current)
- 18:36, 20 April 2016 (diff | hist) . . (+184) . . Pyrad
- 18:22, 20 April 2016 (diff | hist) . . (+142) . . Pyrad
- 18:20, 20 April 2016 (diff | hist) . . (+3) . . Pyrad
- 18:17, 20 April 2016 (diff | hist) . . (+42) . . Pyrad
- 18:16, 20 April 2016 (diff | hist) . . (+70) . . Pyrad
- 18:11, 20 April 2016 (diff | hist) . . (+134) . . Pyrad
- 18:08, 20 April 2016 (diff | hist) . . (+2) . . Pyrad
- 18:07, 20 April 2016 (diff | hist) . . (+5) . . Pyrad
- 18:06, 20 April 2016 (diff | hist) . . (+135) . . Pyrad
- 18:04, 20 April 2016 (diff | hist) . . (0) . . Pyrad
- 18:03, 20 April 2016 (diff | hist) . . (+35) . . Pyrad
- 18:03, 20 April 2016 (diff | hist) . . (+49) . . Pyrad
- 18:02, 20 April 2016 (diff | hist) . . (+134) . . Pyrad
- 17:58, 20 April 2016 (diff | hist) . . (+547) . . Pyrad
- 17:08, 20 April 2016 (diff | hist) . . (+37) . . N Pyrad (Created page with " The go-to tutorial for this is at: *")
- 16:02, 20 April 2016 (diff | hist) . . (+12) . . Main Page
- 17:52, 19 April 2016 (diff | hist) . . (+432) . . Stacks
- 14:33, 19 April 2016 (diff | hist) . . (+3) . . Stacks
- 14:33, 19 April 2016 (diff | hist) . . (+2) . . Stacks
- 14:32, 19 April 2016 (diff | hist) . . (+330) . . Stacks
- 14:05, 19 April 2016 (diff | hist) . . (+2) . . Stacks
- 14:05, 19 April 2016 (diff | hist) . . (+1) . . Stacks
- 14:04, 19 April 2016 (diff | hist) . . (+2) . . Stacks
- 14:03, 19 April 2016 (diff | hist) . . (+1) . . Stacks
- 14:03, 19 April 2016 (diff | hist) . . (+195) . . Stacks
- 13:53, 19 April 2016 (diff | hist) . . (+34) . . Stacks
- 13:52, 19 April 2016 (diff | hist) . . (+88) . . Stacks
- 14:58, 18 April 2016 (diff | hist) . . (+302) . . N Stacks (Created page with "Dominant Radseq analysis software protocol by Julian Catchen. =Steps= * create database * ensure $STACKSROOTDIR/share/stacks/sql/my.cnf is set up properly * ensure modificat...")
- 14:40, 18 April 2016 (diff | hist) . . (+13) . . Main Page
- 17:02, 8 April 2016 (diff | hist) . . (+85) . . Synthetic Long reads (current)
- 16:55, 8 April 2016 (diff | hist) . . (0) . . N File:Biopipe.png (current)
- 16:34, 8 April 2016 (diff | hist) . . (-134) . . Synthetic Long reads
- 16:33, 8 April 2016 (diff | hist) . . (+137) . . Synthetic Long reads
- 16:24, 8 April 2016 (diff | hist) . . (+477) . . Galaxy Setup (current)
- 16:12, 8 April 2016 (diff | hist) . . (+10) . . Synthetic Long reads
- 16:01, 8 April 2016 (diff | hist) . . (+1,617) . . N Synthetic Long reads (Created page with "NGS reads are short in that they found in the 50-200 base-pair length scale. Longer reads are seen as more powerful, so there is a general tendency towards longer reads which...")
- 15:09, 8 April 2016 (diff | hist) . . (+39) . . Main Page
- 15:06, 8 April 2016 (diff | hist) . . (+10) . . Cluster Manual
- 12:43, 8 April 2016 (diff | hist) . . (0) . . N File:Welc.png (current)
- 12:19, 8 April 2016 (diff | hist) . . (+53) . . Python (current)
- 23:55, 7 April 2016 (diff | hist) . . (+10,887) . . N Cluster Manual (Created page with "=Introduction= This manual provides a brief introduction to the usage of St. Andrews’s bioinformatics cluster which consists of the frontend which we call marvin and its te...")
- 23:52, 7 April 2016 (diff | hist) . . (+19) . . Main Page
- 23:15, 7 April 2016 (diff | hist) . . (-69) . . Main Page
- 23:12, 7 April 2016 (diff | hist) . . (+371) . . N Galaxy Setup (Created page with "Galaxy is easy to set up as single user on a laptop, because it's most probably devoid of currently webservices. In other words, the Peronsal edition is easy. O install on mu...")
- 21:11, 7 April 2016 (diff | hist) . . (+20) . . CallSNPs.py
- 13:53, 7 April 2016 (diff | hist) . . (+31) . . Main Page
- 18:48, 6 April 2016 (diff | hist) . . (0) . . File:Callsnppipe.png (Rf uploaded a new version of File:Callsnppipe.png) (current)
- 18:46, 6 April 2016 (diff | hist) . . (+24) . . Velvet
- 18:43, 6 April 2016 (diff | hist) . . (0) . . N File:Intleaved.png (current)
- 18:32, 6 April 2016 (diff | hist) . . (+439) . . Velvet
- 18:28, 6 April 2016 (diff | hist) . . (+18) . . Velvet
- 16:26, 4 April 2016 (diff | hist) . . (+51) . . CallSNPs.py
- 11:26, 4 April 2016 (diff | hist) . . (+84) . . CallSNPs.py (→Stages)
- 11:25, 4 April 2016 (diff | hist) . . (+4) . . CallSNPs.py
- 11:24, 4 April 2016 (diff | hist) . . (+20) . . CallSNPs.py (→Stages)
- 11:21, 4 April 2016 (diff | hist) . . (0) . . N File:Callsnppipe.png
- 11:02, 4 April 2016 (diff | hist) . . (+3) . . CallSNPs.py
- 11:01, 4 April 2016 (diff | hist) . . (+64) . . CallSNPs.py (→Extract features with minimum coverage)
- 10:51, 4 April 2016 (diff | hist) . . (+43) . . CallSNPs.py
- 23:16, 3 April 2016 (diff | hist) . . (+70) . . CallSNPs.py (→Create fasta file from merged VCF file)
- 16:11, 3 April 2016 (diff | hist) . . (-12) . . CallSNPs.py (→Create fasta file from merged VCF file)
- 16:04, 3 April 2016 (diff | hist) . . (-34) . . CallSNPs.py
- 16:03, 3 April 2016 (diff | hist) . . (+176) . . CallSNPs.py (→9. Create fasta file from merged VCF file)
- 16:01, 3 April 2016 (diff | hist) . . (+25) . . CallSNPs.py (→9. Create fasta file from merged VCF file)
- 15:56, 3 April 2016 (diff | hist) . . (+227) . . CallSNPs.py
- 15:46, 3 April 2016 (diff | hist) . . (0) . . CallSNPs.py
- 15:45, 3 April 2016 (diff | hist) . . (+225) . . CallSNPs.py (→8. Merge VCF files)
- 15:38, 3 April 2016 (diff | hist) . . (+11) . . CallSNPs.py (→7. Filter recoded VCF file by quality expression)
- 15:37, 3 April 2016 (diff | hist) . . (+149) . . CallSNPs.py
- 15:25, 3 April 2016 (diff | hist) . . (+209) . . CallSNPs.py (→7. Filter recoded VCF file by quality expression)
- 15:23, 3 April 2016 (diff | hist) . . (+135) . . CallSNPs.py
- 15:12, 3 April 2016 (diff | hist) . . (+253) . . CallSNPs.py (→7. Merge recoded VCF files)
- 15:06, 3 April 2016 (diff | hist) . . (+179) . . CallSNPs.py
- 14:50, 3 April 2016 (diff | hist) . . (0) . . CallSNPs.py (→6. Merge vcf files to reflect common feature set)
- 14:50, 3 April 2016 (diff | hist) . . (+150) . . CallSNPs.py (→6. Merge vcf files to reflect common feature set)
- 14:38, 3 April 2016 (diff | hist) . . (+50) . . CallSNPs.py (→6. Merge vcf files to reflect common feature set)
- 14:21, 3 April 2016 (diff | hist) . . (+342) . . CallSNPs.py (→6. Merge vcf files)
- 14:12, 3 April 2016 (diff | hist) . . (+427) . . CallSNPs.py
- 14:02, 3 April 2016 (diff | hist) . . (-1) . . CallSNPs.py (→5. Intersect samples' features to find common features set)
- 13:05, 3 April 2016 (diff | hist) . . (-10) . . CallSNPs.py (→5. Intersect samples' fecture to find common features they all share)
- 13:05, 3 April 2016 (diff | hist) . . (+50) . . CallSNPs.py
- 13:03, 3 April 2016 (diff | hist) . . (+117) . . CallSNPs.py
- 13:00, 3 April 2016 (diff | hist) . . (+215) . . CallSNPs.py
- 12:24, 3 April 2016 (diff | hist) . . (+66) . . CallSNPs.py
- 23:35, 2 April 2016 (diff | hist) . . (+4) . . CallSNPs.py
- 23:26, 2 April 2016 (diff | hist) . . (+135) . . CallSNPs.py
- 23:21, 2 April 2016 (diff | hist) . . (0) . . CallSNPs.py
- 23:20, 2 April 2016 (diff | hist) . . (+131) . . CallSNPs.py
- 23:13, 2 April 2016 (diff | hist) . . (+282) . . CallSNPs.py
- 23:04, 2 April 2016 (diff | hist) . . (+130) . . CallSNPs.py (later)
- 22:18, 2 April 2016 (diff | hist) . . (+2) . . CallSNPs.py
- 22:16, 2 April 2016 (diff | hist) . . (0) . . CallSNPs.py
- 22:15, 2 April 2016 (diff | hist) . . (+8) . . CallSNPs.py
- 22:07, 2 April 2016 (diff | hist) . . (+14) . . CallSNPs.py
- 21:43, 2 April 2016 (diff | hist) . . (0) . . CallSNPs.py
- 14:50, 2 April 2016 (diff | hist) . . (+6) . . CallSNPs.py
- 14:50, 2 April 2016 (diff | hist) . . (+292) . . CallSNPs.py
- 18:24, 1 April 2016 (diff | hist) . . (+248) . . CallSNPs.py
- 17:50, 1 April 2016 (diff | hist) . . (+326) . . CallSNPs.py
- 17:16, 1 April 2016 (diff | hist) . . (+198) . . CallSNPs.py
- 17:10, 1 April 2016 (diff | hist) . . (+2) . . CallSNPs.py
- 16:53, 1 April 2016 (diff | hist) . . (+25) . . CallSNPs.py
- 16:50, 1 April 2016 (diff | hist) . . (-14) . . CallSNPs.py
- 16:49, 1 April 2016 (diff | hist) . . (-4) . . CallSNPs.py
- 16:48, 1 April 2016 (diff | hist) . . (+2) . . CallSNPs.py
- 16:48, 1 April 2016 (diff | hist) . . (+245) . . CallSNPs.py
- 16:41, 1 April 2016 (diff | hist) . . (+446) . . N CallSNPs.py (Created page with "This script is part of "script_tools" modules. It requires an alignment in the shape of the base reference sequence and the bam files of the short read aligned to that sequen...")
- 16:24, 1 April 2016 (diff | hist) . . (+37) . . Main Page
- 18:36, 31 March 2016 (diff | hist) . . (+157) . . N Bowtie2 (Created page with "= Introduction = = Install notes = * version 2.2.4 and upwards seem to use a new executable style whereby there is a principal bowtie2 executable and then") (current)
- 17:55, 31 March 2016 (diff | hist) . . (+14) . . Main Page
- 17:50, 31 March 2016 (diff | hist) . . (0) . . Srst2
- 17:46, 31 March 2016 (diff | hist) . . (+321) . . N Srst2 (Created page with "=introduction= This python based tool with two main dependencies (samtools and bowtie2) carries out mapping of short reads to detect overall three targets: 1) genes 2) allel...")
- 17:17, 31 March 2016 (diff | hist) . . (+12) . . Main Page
- 18:01, 30 March 2016 (diff | hist) . . (+503) . . BLAST
- 16:34, 30 March 2016 (diff | hist) . . (+458) . . N Velvet (Created page with "This is Daniel Zerbino and Ewan Birney's de-novo genome assembler and is one of the most widely used. It consists of two stages, a hashing stage invoked by the velveth progra...")
- 16:28, 30 March 2016 (diff | hist) . . (+13) . . Main Page
- 16:02, 29 March 2016 (diff | hist) . . (+728) . . N Python (Created page with "The issue with python on Marvin is that the simple "python" executable is not the bioinformatic python version. It's a version just for the system only. Instead, you have to...")
- 16:02, 29 March 2016 (diff | hist) . . (+13) . . Main Page
- 17:55, 24 March 2016 (diff | hist) . . (+356) . . Kallisto
- 19:51, 23 March 2016 (diff | hist) . . (0) . . Kallisto
- 19:50, 23 March 2016 (diff | hist) . . (+314) . . Kallisto
- 18:24, 23 March 2016 (diff | hist) . . (+20) . . Sra-tools
- 18:23, 23 March 2016 (diff | hist) . . (-127) . . Sra-tools
- 18:22, 23 March 2016 (diff | hist) . . (+176) . . Sra-tools
- 18:09, 23 March 2016 (diff | hist) . . (+278) . . N Kallisto (Created page with "It's the new (2015) way of calculating gene expression abundance from NGS short reads It calimms a large increase in speed by avoiding the normal alignment step =Using= ==...")
- 17:56, 23 March 2016 (diff | hist) . . (+7,574) . . Sra-tools
- 17:49, 23 March 2016 (diff | hist) . . (+5) . . Sra-tools
- 17:48, 23 March 2016 (diff | hist) . . (+468) . . N Sra-tools (Created page with "To load module load sra-tools the chief command for thsi tool box is fastq-dump, which downloads the SRA you are looking for Identifying the right SRA name is an issue, so...")
- 17:43, 23 March 2016 (diff | hist) . . (+31) . . Main Page
- 15:20, 8 February 2016 (diff | hist) . . (-2) . . Blast2go: b2g4pipe (→Installation and configuration) (current)
- 15:19, 8 February 2016 (diff | hist) . . (-231) . . Blast2go: b2g4pipe (→databases)
- 15:13, 8 February 2016 (diff | hist) . . (-74) . . Blast2go: b2g4pipe
- 15:11, 8 February 2016 (diff | hist) . . (+1,054) . . Blast2go: b2g4pipe
- 14:58, 8 February 2016 (diff | hist) . . (+442) . . N Blast2go: b2g4pipe (Created page with "Blast2go is the gene ontology annotation program for eukaryotes. Some time after 2012, it became commercialised, although the free usage of early version is still permitted....")
- 14:55, 8 February 2016 (diff | hist) . . (+25) . . Main Page
- 13:45, 8 February 2016 (diff | hist) . . (+206) . . N Diamond (Created page with "This is very fast alternative to the blastx program. This page contains some details about the program == key points made== * Describes blastx as the "gold standard" * high...")
- 12:21, 8 February 2016 (diff | hist) . . (+92) . . Main Page
- 19:22, 5 February 2016 (diff | hist) . . (+1) . . BLAST
- 19:22, 5 February 2016 (diff | hist) . . (+1,394) . . N BLAST (Created page with "This is probably the best known of all bioinformatics applications, and consequently has various different aspects to it. =mpiBLAST= This version which stopped development i...")
- 17:18, 1 February 2016 (diff | hist) . . (0) . . Blast
- 17:17, 1 February 2016 (diff | hist) . . (+221) . . Blast
- 15:59, 1 February 2016 (diff | hist) . . (+15) . . Blast
- 15:46, 1 February 2016 (diff | hist) . . (0) . . Blast
- 15:07, 1 February 2016 (diff | hist) . . (+301) . . N Blast (Created page with "=Introduction= The workhorse of bioinformatics, some tips on usgae, and (mostly) how to speed it up = Benchmark Exercises = == Transcriptome Panda Blood == * 92600 transcri...")
- 19:18, 19 January 2016 (diff | hist) . . (+17) . . Main Page
- 19:17, 19 January 2016 (diff | hist) . . (-19) . . STAR BEAST (current)
- 19:16, 19 January 2016 (diff | hist) . . (-6,960) . . STAR BEAST
- 19:07, 19 January 2016 (diff | hist) . . (+22,232) . . N STAR BEAST (Created page with " =Introduction= Bayesian Inference of Species Trees from Multilocus Data using *BEAST, Alexei J Drummond, Walter Xie and Joseph Heled April 13, 2012 Provides joint inferenc...")
- 18:54, 19 January 2016 (diff | hist) . . (+40) . . Main Page
- 18:52, 19 January 2016 (diff | hist) . . (-536) . . Main Page (Replaced content with "Placeholder wiki == Protocols == * Trinity_Protocol")
- 20:29, 18 January 2016 (diff | hist) . . (-90) . . Globus gridftp (current)
- 20:27, 18 January 2016 (diff | hist) . . (+59) . . Globus gridftp
- 20:22, 18 January 2016 (diff | hist) . . (+2,155) . . N Globus gridftp (Created page with "=Introduction= * Well-established secure data distribution system designed with research in mind * Ofrece un entorno parecido a FTP pero más seguro (hay dos niveles de segur...")
- 18:19, 18 January 2016 (diff | hist) . . (+21,371) . . Trinity Protocol
- 18:08, 18 January 2016 (diff | hist) . . (+826) . . N Trinity Protocol (Created page with "This is the Trinity protocol for assembling transcriptomes ==Timing== Steps 1–3, collection of RNA-seq data: ~10 min Steps 4–7, Trinity de novo transcriptome assembly...")
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