Snpcallphylo

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Introduction

Cosmika Goswami's pipeline for call SNPs on prokaryotic NGS data.


Procedure

  • It is best to create a dedicated folder/directory in which you will carry out your work
  • Copy the snpcallphylo python executable into it and create two subfolders: input and output. You can also choose other names.
  • either copy or symlink you data files into the input directory