Difference between revisions of "SPAdes"
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Pavel Pevzsner's de-novo assembler, primarily for - but not restricted to - bacteria. | Pavel Pevzsner's de-novo assembler, primarily for - but not restricted to - bacteria. | ||
| − | = Installation = | + | = Installation (Sysadmin notes)= |
| − | + | Initially version 3.7.0 was insatlled using the specially compiled gcc/4.9.3 compiler (available as a module). However the '''-b''' version of the module now uses REdHat''s devtoolset-2, | |
| + | so that this compiler is not necessary. | ||
| − | + | Boost however, is necessary. The cluster has the latest version: 1.60. Possibly compiled (well, the bits that can be compiled) with g++ 4.4.7. | |
| + | |||
| + | There is no make test nor make check. There is however, this: | ||
| + | |||
| + | <spades installation dir>/spades.py --test | ||
Revision as of 14:20, 10 May 2016
Introduction
Pavel Pevzsner's de-novo assembler, primarily for - but not restricted to - bacteria.
Installation (Sysadmin notes)
Initially version 3.7.0 was insatlled using the specially compiled gcc/4.9.3 compiler (available as a module). However the -b version of the module now uses REdHats devtoolset-2, so that this compiler is not necessary.
Boost however, is necessary. The cluster has the latest version: 1.60. Possibly compiled (well, the bits that can be compiled) with g++ 4.4.7.
There is no make test nor make check. There is however, this:
<spades installation dir>/spades.py --test
