Difference between revisions of "Roary"
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The tutorial located [https://github.com/microgenomics/tutorials/blob/master/pangenome.md here] is a good way to both test and get aquainted with roary's capabilities. | The tutorial located [https://github.com/microgenomics/tutorials/blob/master/pangenome.md here] is a good way to both test and get aquainted with roary's capabilities. | ||
| + | |||
| + | = Installation = | ||
| + | |||
| + | Roary will now install under cpanm. However it is necessary to have all the dependency modules loaded, and it has quite a number of them: | ||
| + | |||
| + | * fasttree | ||
| + | * cd-hit | ||
| + | * prank-msa | ||
| + | * mafft | ||
| + | * mcl | ||
| + | * bedtools | ||
Latest revision as of 13:52, 21 September 2017
Introduction
Pan-genome maker from Andrew Page mostly coded in Perl.
Usage tutorial
The tutorial located here is a good way to both test and get aquainted with roary's capabilities.
Installation
Roary will now install under cpanm. However it is necessary to have all the dependency modules loaded, and it has quite a number of them:
- fasttree
- cd-hit
- prank-msa
- mafft
- mcl
- bedtools
