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This is a python package (so no special module loading is required) and is especially used for its and scripts.

Usage -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>

This should give a PDF plot. -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>

Also: -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir> -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>