Difference between revisions of "RSeQC"

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(Created page with "= Introduction = This is a python package (so no special module loading is required) and is especially used for its '''inner_distance.py''' script. = Usage = inner_distanc...")
 
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= Introduction =
 
= Introduction =
  
This is a python package (so no special module loading is required) and is especially used for its '''inner_distance.py''' script.
+
This is a python package (so no special module loading is required) and is especially used for its '''inner_distance.py''' and '''geneBody_coverage.py''' scripts.
  
 
= Usage =
 
= Usage =
  
 
  inner_distance.py -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>
 
  inner_distance.py -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>
 +
 +
This should give a PDF plot.
 +
 +
geneBody_coverage.py -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>
 +
 +
Also:
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 +
junction_saturation.py -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>

Revision as of 13:37, 23 February 2017

Introduction

This is a python package (so no special module loading is required) and is especially used for its inner_distance.py and geneBody_coverage.py scripts.

Usage

inner_distance.py -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>

This should give a PDF plot.

geneBody_coverage.py -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>

Also:

junction_saturation.py -i <bamfile> -r <reference_rendered_as_gene_model_bed_file> -o <output_dir>