Difference between revisions of "One-liners"
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Revision as of 18:50, 13 March 2017
You have a genome coverage file in bedgraph format (final, fourth column is the coverage for a particular section) amd would like to find the max value:
awk '{if($4>mxc) mxc=$4} END {print mxc}' v30chronly_s.cov
A genome coverage file what is the average coverage per base?
awk '{tot=tot+$4/($3-$2); la=$3} END {print tot/la}' v30chronly_s.cov
