Difference between revisions of "New schedule"
| Line 1: | Line 1: | ||
| + | __TOC__ | ||
| − | Session 1, 90mins., before morning coffee | + | = Session 1, 90mins., before morning coffee = |
| − | |||
| − | Introduction (15mins) | + | == Introduction (15mins) == |
| − | |||
| − | * | + | * Main and support instructors |
| − | * | + | * Each participant |
| − | * | + | * Aims and scope |
| − | * | + | * Challenges of bioinformatics and genomics |
| − | History of Unix (30mins) | + | == History of Unix (30mins) == |
| − | |||
* First 5 minutes of time sharing footage | * First 5 minutes of time sharing footage | ||
| Line 19: | Line 17: | ||
* How this nature might help meet current challenges | * How this nature might help meet current challenges | ||
| − | Accessing terminal (15mins) | + | == Accessing terminal (15mins) == |
| − | |||
* Logging on to Windows with University ID | * Logging on to Windows with University ID | ||
* Finding PuTTY (locally or through Apps Anywhere) | * Finding PuTTY (locally or through Apps Anywhere) | ||
| − | + | === Procedure for PuTTY === | |
* Server 138.251.13.131 or marvin.st-andrews.ac.uk, port 22, SSH. | * Server 138.251.13.131 or marvin.st-andrews.ac.uk, port 22, SSH. | ||
| Line 31: | Line 28: | ||
* Connection | Data | Auto-login username: <username> | * Connection | Data | Auto-login username: <username> | ||
* Saved session: enter any chosen name, save | * Saved session: enter any chosen name, save | ||
| − | * | + | * "Connect" |
| − | * PuTTY Security Alert | + | * PuTTY Security Alert "The server's host key is not cached in the registry": click "yes" |
| − | * Once in, type | + | * Once in, type "fortune" to see if keyboard is OK. |
| − | * First operation will be ... to get out again! Type | + | * First operation will be ... to get out again! Type "exit" or "logout" |
* This gets us back to Windows | * This gets us back to Windows | ||
* Also logout of Windows (Apps Anywhere also seems to have a logout procedure) | * Also logout of Windows (Apps Anywhere also seems to have a logout procedure) | ||
* Then repeat the entire procedure | * Then repeat the entire procedure | ||
| − | Quiz | + | == Quiz == |
| − | |||
| − | Session 2, 90mins., 11am to 12:30 | + | = Session 2, 90mins., 11am to 12:30 = |
| − | |||
* The first part of course runthough. It's likely this will spill over into Session 3 | * The first part of course runthough. It's likely this will spill over into Session 3 | ||
| − | Session 3, 90mins., 13:30 to 15:00 | + | = Session 3, 90mins., 13:30 to 15:00 = |
| − | |||
* Spill over from Course Runthrough (30 mins) | * Spill over from Course Runthrough (30 mins) | ||
* This part will be anchored by a Vim presentation | * This part will be anchored by a Vim presentation | ||
| − | Session 4, 90mins., 15:30 to 17:00 | + | = Session 4, 90mins., 15:30 to 17:00 = |
| − | |||
* This is for advanced tools: mostly about awk and bioawk. Using various file formats. | * This is for advanced tools: mostly about awk and bioawk. Using various file formats. | ||
Latest revision as of 23:41, 5 October 2016
Contents
Session 1, 90mins., before morning coffee
Introduction (15mins)
- Main and support instructors
- Each participant
- Aims and scope
- Challenges of bioinformatics and genomics
History of Unix (30mins)
- First 5 minutes of time sharing footage
- The personal computer and how Unix did not arise from it, but other systems did
- How Unix history has shaped its character
- How this nature might help meet current challenges
Accessing terminal (15mins)
- Logging on to Windows with University ID
- Finding PuTTY (locally or through Apps Anywhere)
Procedure for PuTTY
- Server 138.251.13.131 or marvin.st-andrews.ac.uk, port 22, SSH.
- Terminal keyboard: VT100+
- Connection | Data | Auto-login username: <username>
- Saved session: enter any chosen name, save
- "Connect"
- PuTTY Security Alert "The server's host key is not cached in the registry": click "yes"
- Once in, type "fortune" to see if keyboard is OK.
- First operation will be ... to get out again! Type "exit" or "logout"
- This gets us back to Windows
- Also logout of Windows (Apps Anywhere also seems to have a logout procedure)
- Then repeat the entire procedure
Quiz
Session 2, 90mins., 11am to 12:30
- The first part of course runthough. It's likely this will spill over into Session 3
Session 3, 90mins., 13:30 to 15:00
- Spill over from Course Runthrough (30 mins)
- This part will be anchored by a Vim presentation
Session 4, 90mins., 15:30 to 17:00
- This is for advanced tools: mostly about awk and bioawk. Using various file formats.
