Difference between revisions of "New schedule"
| Line 1: | Line 1: | ||
| − | |||
| − | = Introduction | + | Session 1, 90mins., before morning coffee |
| − | * Main and support instructors | + | ====================================== |
| − | * Each participant | + | |
| − | * Aims and scope | + | Introduction (15mins) |
| − | * Challenges of bioinformatics and genomics | + | --------------------- |
| + | |||
| + | * Main and support instructors | ||
| + | * Each participant | ||
| + | * Aims and scope | ||
| + | * Challenges of bioinformatics and genomics | ||
| + | |||
| + | History of Unix (30mins) | ||
| + | ------------------------ | ||
| − | |||
* First 5 minutes of time sharing footage | * First 5 minutes of time sharing footage | ||
| + | * The personal computer and how Unix did not arise from it, but other systems did | ||
* How Unix history has shaped its character | * How Unix history has shaped its character | ||
| − | * How this nature might help meet current | + | * How this nature might help meet current challenges |
| + | |||
| + | Accessing terminal (15mins) | ||
| + | --------------------------- | ||
| − | |||
* Logging on to Windows with University ID | * Logging on to Windows with University ID | ||
* Finding PuTTY (locally or through Apps Anywhere) | * Finding PuTTY (locally or through Apps Anywhere) | ||
| − | + | ### Procedure for PuTTY | |
| + | |||
* Server 138.251.13.131 or marvin.st-andrews.ac.uk, port 22, SSH. | * Server 138.251.13.131 or marvin.st-andrews.ac.uk, port 22, SSH. | ||
| − | |||
* Terminal keyboard: VT100+ | * Terminal keyboard: VT100+ | ||
| − | * Saved session: enter name, save | + | * Connection | Data | Auto-login username: <username> |
| − | * | + | * Saved session: enter any chosen name, save |
| + | * "Connect" | ||
| + | * PuTTY Security Alert "The server's host key is not cached in the registry": click "yes" | ||
| + | * Once in, type "fortune" to see if keyboard is OK. | ||
| + | * First operation will be ... to get out again! Type "exit" or "logout" | ||
| + | * This gets us back to Windows | ||
| + | * Also logout of Windows (Apps Anywhere also seems to have a logout procedure) | ||
| + | * Then repeat the entire procedure | ||
| + | |||
| + | Quiz | ||
| + | ---- | ||
| + | |||
| + | Session 2, 90mins., 11am to 12:30 | ||
| + | ============================== | ||
| + | |||
| + | * The first part of course runthough. It's likely this will spill over into Session 3 | ||
| + | |||
| + | Session 3, 90mins., 13:30 to 15:00 | ||
| + | =============================== | ||
| + | |||
| + | * Spill over from Course Runthrough (30 mins) | ||
| + | * This part will be anchored by a Vim presentation | ||
| + | |||
| + | Session 4, 90mins., 15:30 to 17:00 | ||
| + | =============================== | ||
| + | |||
| + | * This is for advanced tools: mostly about awk and bioawk. Using various file formats. | ||
Revision as of 23:39, 5 October 2016
Session 1, 90mins., before morning coffee
Contents
==========================
Introduction (15mins)
- Main and support instructors
- Each participant
- Aims and scope
- Challenges of bioinformatics and genomics
History of Unix (30mins)
- First 5 minutes of time sharing footage
- The personal computer and how Unix did not arise from it, but other systems did
- How Unix history has shaped its character
- How this nature might help meet current challenges
Accessing terminal (15mins)
- Logging on to Windows with University ID
- Finding PuTTY (locally or through Apps Anywhere)
- Procedure for PuTTY
- Server 138.251.13.131 or marvin.st-andrews.ac.uk, port 22, SSH.
- Terminal keyboard: VT100+
- Connection | Data | Auto-login username: <username>
- Saved session: enter any chosen name, save
- "Connect"
- PuTTY Security Alert "The server's host key is not cached in the registry": click "yes"
- Once in, type "fortune" to see if keyboard is OK.
- First operation will be ... to get out again! Type "exit" or "logout"
- This gets us back to Windows
- Also logout of Windows (Apps Anywhere also seems to have a logout procedure)
- Then repeat the entire procedure
Quiz
Session 2, 90mins., 11am to 12:30
==================
- The first part of course runthough. It's likely this will spill over into Session 3
Session 3, 90mins., 13:30 to 15:00
===================
- Spill over from Course Runthrough (30 mins)
- This part will be anchored by a Vim presentation
Session 4, 90mins., 15:30 to 17:00
===================
- This is for advanced tools: mostly about awk and bioawk. Using various file formats.
