Difference between revisions of "Main Page"

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* [[MUMmer]]
* [[MUMmer]]
* [[OrthoFinder]]
* [[OrthoFinder]]
* [[quast]]
* [[PGAP]]
* [[PGAP]]
* [[prokka]]
* [[prokka]]

Revision as of 14:32, 6 February 2017

Usage of Cluster

Documented Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples


(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites



(Workflow with a specific end-goal)


(Extensive workflows with different with several possible end goals)

Cluster Administration