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A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with '''q''' and with '''qsub''' being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:
 
A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with '''q''' and with '''qsub''' being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:
 
* [[Queue Manager Tips]]
 
* [[Queue Manager Tips]]
 +
* [[General Command-line Tips]]
  
 
= Data Examples =
 
= Data Examples =

Revision as of 12:43, 8 November 2016

Usage of Cluster

Documented Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples

Procedures

(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites

Explanations

Pipelines

(Workflow with a specific end-goal)

Protocols

(Extensive workflows with different with several possible end goals) Synthetic Long reads

Cluster Administration

Courses

I2U4BGA

Templates