Difference between revisions of "Main Page"

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* [[i2u4bga]]
 
* [[edgenl2g]]
 
 
 
= Usage of Cluster=
 
= Usage of Cluster=
 
* [[Cluster Manual]]
 
* [[Cluster Manual]]
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* [[Incident: Can't connect to BerkeleyDB]]
 
* [[Incident: Can't connect to BerkeleyDB]]
 
* [[Bioinformatics Wordpress Site]]
 
* [[Bioinformatics Wordpress Site]]
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= Courses =
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==IU4BGA==
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* [[Cheatsheets]]
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==Templates==
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* [[edgenl2g]]

Revision as of 11:02, 3 October 2016

Usage of Cluster

Documented Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples

Procedures

(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites

Explanations

Pipelines

(Workflow with a specific end-goal)

Protocols

(Extensive workflows with different with several possible end goals) Synthetic Long reads

Cluster Administration

Courses

IU4BGA

Templates