Difference between revisions of "Main Page"

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* [[ensembl]]
 
* [[ensembl]]
 
* [[FASTQC and MultiQC]]
 
* [[FASTQC and MultiQC]]
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* [[GapFiller]]
 
* [[gubbins]]
 
* [[gubbins]]
 
* [[JBrowse]]
 
* [[JBrowse]]

Revision as of 14:37, 1 September 2016

Usage of Cluster

Documented Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples

Procedures

(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites

File format expalanations

Pipelines

(Workflow with a specific end-goal)

Protocols

(Extensive workflows with different with several possible end goals) Synthetic Long reads

Cluster Administration