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* [[stacks]]
* [[stacks]]
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* [[Trinity]]
* [[t-coffee]]
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* [[velvet]]
* [[velvet]]

Revision as of 14:33, 27 January 2017

Usage of Cluster

Documented Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples


(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites



(Workflow with a specific end-goal)


(Extensive workflows with different with several possible end goals)

Cluster Administration