Difference between revisions of "Main Page"

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* [[Galaxy Setup]]
* [[Galaxy Setup]]
* [[Son of Gridengine]]
* [[Son of Gridengine]]
* [[Blas Libraries]]
* [[CMake]]
* [[CMake]]
* [[Users and Groups]]
* [[Users and Groups]]

Revision as of 14:58, 6 September 2016

Usage of Cluster

Documented Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples


(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites

File format expalanations


(Workflow with a specific end-goal)


(Extensive workflows with different with several possible end goals) Synthetic Long reads

Cluster Administration