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* [[CAFE]]
 
* [[CAFE]]
 
* [[SPAdes]]
 
* [[SPAdes]]
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* [[multiqc]]
  
 
= Queue Manager Tips =
 
= Queue Manager Tips =

Revision as of 14:32, 23 June 2016

Usage of Cluster

Cluster Manual

Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples

Pipelines

Protocols

Synthetic Long reads

Cluster Administration