Difference between revisions of "Main Page"

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* [[STAR BEAST]]
 
* [[STAR BEAST]]
 
* [[callSNPs.py]]
 
* [[callSNPs.py]]
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* [[Edgen RNAseq]]
  
 
==Protocols==
 
==Protocols==

Revision as of 22:09, 22 May 2016

Usage of Cluster

Cluster Manual

Programs


Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to manage such a system. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples

Pipelines

Protocols

Synthetic Long reads

Cluster Administration