Difference between revisions of "Main Page"

From wiki
Jump to: navigation, search
Line 16: Line 16:
 
* [[pyrad]]
 
* [[pyrad]]
 
* [[cd-hit]]
 
* [[cd-hit]]
 +
* [[SPAdes]]
  
 
= Queue Manager Tips =
 
= Queue Manager Tips =

Revision as of 13:54, 4 May 2016

Usage of Cluster

Cluster Manual

Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to manage such a system. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Pipelines

Protocols

Synthetic Long reads

Cluster Administration