Difference between revisions of "Detonate"

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(Created page with "= Introduction = Quality evaulation of a de-novo transcriptome assembly from the creators of RSEM (Deweylab). = Layout = Two main aspects to this program. Also included her...")
 
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Two main aspects to this program. Also included here are the executables associated
 
Two main aspects to this program. Also included here are the executables associated
 
* rsem-eval
 
* rsem-eval
** rsem-eval-calculate-score
+
## rsem-eval-calculate-score
 
** rsem-eval-estimate-transcript-length-distribution
 
** rsem-eval-estimate-transcript-length-distribution
 
** rsem-plot-model
 
** rsem-plot-model

Revision as of 12:22, 30 January 2017

Introduction

Quality evaulation of a de-novo transcriptome assembly from the creators of RSEM (Deweylab).

Layout

Two main aspects to this program. Also included here are the executables associated

  • rsem-eval
    1. rsem-eval-calculate-score
    • rsem-eval-estimate-transcript-length-distribution
    • rsem-plot-model
    • rsem-build-read-index
    • rsem-eval-run-em
    • rsem-extract-reference-transcripts
    • rsem-parse-alignments
    • rsem-preref
    • rsem-sam-validator
    • rsem-scan-for-paired-end-reads
    • rsem-simulate-reads
  • ref-eval