Difference between revisions of "Detonate"
| Line 9: | Line 9: | ||
*# rsem-eval-calculate-score | *# rsem-eval-calculate-score | ||
*# rsem-eval-estimate-transcript-length-distribution | *# rsem-eval-estimate-transcript-length-distribution | ||
| − | * | + | *# rsem-plot-model |
| − | * | + | *# rsem-build-read-index |
| − | * | + | *# rsem-eval-run-em |
| − | * | + | *# rsem-extract-reference-transcripts |
| − | * | + | *# rsem-parse-alignments |
| − | * | + | *# rsem-preref |
| − | * | + | *# rsem-sam-validator |
| − | * | + | *# rsem-scan-for-paired-end-reads |
| − | * | + | *# rsem-simulate-reads |
* ref-eval | * ref-eval | ||
Revision as of 13:23, 30 January 2017
Introduction
Quality evaulation of a de-novo transcriptome assembly from the creators of RSEM (Deweylab).
Layout
Two main aspects to this program. Also included here are the executables associated
- rsem-eval
- rsem-eval-calculate-score
- rsem-eval-estimate-transcript-length-distribution
- rsem-plot-model
- rsem-build-read-index
- rsem-eval-run-em
- rsem-extract-reference-transcripts
- rsem-parse-alignments
- rsem-preref
- rsem-sam-validator
- rsem-scan-for-paired-end-reads
- rsem-simulate-reads
- ref-eval
