Difference between revisions of "ChIP-Seq Top2 in Yeast"
| Line 12: | Line 12: | ||
= Bam quality = | = Bam quality = | ||
| + | == First Experiment == | ||
* [http://stab.st-andrews.ac.uk/top2/bamquals0/ULSIP_E1_cad1tro_srtd_bamqc.html ULS1_IP_E1] | * [http://stab.st-andrews.ac.uk/top2/bamquals0/ULSIP_E1_cad1tro_srtd_bamqc.html ULS1_IP_E1] | ||
* [http://stab.st-andrews.ac.uk/top2/bamquals0/ULSINP_E1_cad1tro_srtd_bamqc.html ULS1_INP_E1] | * [http://stab.st-andrews.ac.uk/top2/bamquals0/ULSINP_E1_cad1tro_srtd_bamqc.html ULS1_INP_E1] | ||
* [http://stab.st-andrews.ac.uk/top2/bamquals0/WTIP_E1_cad1tro_srtd_bamqc.html WT_IP_E1] | * [http://stab.st-andrews.ac.uk/top2/bamquals0/WTIP_E1_cad1tro_srtd_bamqc.html WT_IP_E1] | ||
* [http://stab.st-andrews.ac.uk/top2/bamquals0/WTINP_E1_cad1tro_srtd_bamqc.html WT_INP_E1] | * [http://stab.st-andrews.ac.uk/top2/bamquals0/WTINP_E1_cad1tro_srtd_bamqc.html WT_INP_E1] | ||
| + | |||
| + | == Second Experiment == | ||
| + | * [http://stab.st-andrews.ac.uk/top2/bamquals0/ULSIP_cad1_srtd_bamqc.html ULS1_IP_E1] | ||
Revision as of 18:34, 30 July 2017
Introduction
This wiki page combines the two sequencing experiments of ChIP-Seq on yeast samples udring June / July 2017.
Sample quality
The MACS2 program takes care of duplicates so samples were only trimmed for adapters and quality.
