Difference between revisions of "Ariba"

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(Created page with "= Introduction = = Links =")
 
 
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= Introduction =
 
= Introduction =
  
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Antimicrobial resistance software
  
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= Testing and usage =
  
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ariba getref card out.card
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ariba prepareref -f out.card.fa -m out.card.tsv out.card.prepareref
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ariba run out.card.prepareref reads1.fastq reads2.fastq out.run
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 +
Last line will fail because the reads are not provided.
  
 
= Links =
 
= Links =
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 +
* [https://github.com/sanger-pathogens/ariba/wiki Homepage] of the project.

Latest revision as of 12:44, 27 March 2017

Introduction

Antimicrobial resistance software

Testing and usage

ariba getref card out.card
ariba prepareref -f out.card.fa -m out.card.tsv out.card.prepareref
ariba run out.card.prepareref reads1.fastq reads2.fastq out.run

Last line will fail because the reads are not provided.

Links