ViennaRNA

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Introduction

Quite a large software package for dealing with RNA and RNA structure.

It is only available on the biotime machine.

Executables

Here are the executables that it installs:

RNAfold
RNAeval
RNAheat
RNApdist
RNAdistance
RNAinverse
RNAplot
RNAsubopt
RNALfold
RNAcofold
RNApaln
RNAduplex
RNAalifold
RNAplfold
RNAup
RNAaliduplex
RNALalifold
RNA2Dfold
RNAparconv
RNAPKplex
RNAplex
RNAsnoop
RNApvmin
b2ct
popt
ct2db
Kinfold
RNAforester
RNAlocmin

Installation

ViennaRNA has a perl interface as well as a python interface for both pythons, version 2 and version 3.

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