ViennaRNA

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Introduction

Quite a large software package for dealing with RNA and RNA structure

Here are the executables that it installs:

  • RNAfold
  • RNAeval
  • RNAheat
  • RNApdist
  • RNAdistance
  • RNAinverse
  • RNAplot
  • RNAsubopt
  • RNALfold
  • RNAcofold
  • RNApaln
  • RNAduplex
  • RNAalifold
  • RNAplfold
  • RNAup
  • RNAaliduplex
  • RNALalifold
  • RNA2Dfold
  • RNAparconv
  • RNAPKplex
  • RNAplex
  • RNAsnoop
  • RNApvmin
  • b2ct
  • popt
  • ct2db
  • Kinfold
  • RNAforester
  • RNAlocmin

Installation

ViennaRNA has a perl interface as well as a python interface for both pythons, version 2 and version 3.

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