Difference between revisions of "Installing software on marvin"
(Created page with "=Installing software on Marvin/Module= Software needs to be installed in: /usr/local/Modules/modulefiles/tools/<software name>/<version number>/ to make use of the modules f...") |
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Software needs to be installed in: | Software needs to be installed in: | ||
/usr/local/Modules/modulefiles/tools/<software name>/<version number>/ | /usr/local/Modules/modulefiles/tools/<software name>/<version number>/ | ||
| − | to make use of the modules feature. | + | or |
| + | /shelf/modulefiles/ | ||
| + | to make use of the modules feature. **Beware** using /usr/local/Modules/ as there's only 50Gb of space on /. Use /shelf/modulefiles/ for anything big (I'm looking at you interproscan). | ||
The text files that tells modules that the software is there are located in: | The text files that tells modules that the software is there are located in: | ||
Revision as of 09:32, 24 January 2018
Software needs to be installed in:
/usr/local/Modules/modulefiles/tools/<software name>/<version number>/
or
/shelf/modulefiles/
to make use of the modules feature. **Beware** using /usr/local/Modules/ as there's only 50Gb of space on /. Use /shelf/modulefiles/ for anything big (I'm looking at you interproscan).
The text files that tells modules that the software is there are located in:
/usr/local/Modules/3.2.10/modulefiles/<software>/<version number>
An example of which is below:
#%Module1.0#####################################################################
##
##
proc ModulesHelp { } {
puts stderr "\tStacks - loads Stacks 2.0Beta7c software
\tSoftware available:
\tcstacks
\testacks
\thstacks
\tpstacks
\trxstacks
\tsstacks
\tustacks
"
}
module-whatis "loads Stacks version 1.41 software"
module load perl samtools/0.1.19b sparsehash
# for Tcl script use only
set version 2.0Beta7c
set prefix /usr/local/Modules/modulefiles/tools/stacks/${version}
set sys linux64
setenv STACKSROOTDIR ${prefix}
prepend-path PATH ${prefix}/bin
