MediaWiki API result
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{
"compare": {
"fromid": 1,
"fromrevid": 1,
"fromns": 0,
"fromtitle": "Main Page",
"toid": 2,
"torevid": 2,
"tons": 0,
"totitle": "Trinity Protocol",
"*": "<tr><td colspan=\"2\" class=\"diff-lineno\" id=\"mw-diff-left-l1\" >Line 1:</td>\n<td colspan=\"2\" class=\"diff-lineno\">Line 1:</td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\"><strong>MediaWiki has been successfully installed.</strong></del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">This is the Trinity protocol for assembling transcriptomes</ins></div></td></tr>\n<tr><td class='diff-marker'> </td><td class='diff-context'></td><td class='diff-marker'> </td><td class='diff-context'></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">==Timing==</ins></div></td></tr>\n<tr><td class='diff-marker'> </td><td class='diff-context'></td><td class='diff-marker'> </td><td class='diff-context'></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">== Getting started ==</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"> Steps 1\u20133, collection of RNA-seq data: ~10 min</ins></div></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">* [//www.mediawiki.org/wiki/Special</del>:<del class=\"diffchange diffchange-inline\">MyLanguage/Manual</del>:<del class=\"diffchange diffchange-inline\">Configuration_settings Configuration settings list]</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"> Steps 4\u20137, Trinity de novo transcriptome assembly of 4 million paired-end Illumina reads</ins>: <ins class=\"diffchange diffchange-inline\">60\u201390 min</ins></div></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">* [//www.mediawiki.org/wiki/Special</del>:<del class=\"diffchange diffchange-inline\">MyLanguage/Manual</del>:<del class=\"diffchange diffchange-inline\">FAQ MediaWiki FAQ]</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"> Steps 8\u201313, quality assessment (optional)</ins>: <ins class=\"diffchange diffchange-inline\">~90 min</ins></div></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">* [https</del>:<del class=\"diffchange diffchange-inline\">//lists</del>.<del class=\"diffchange diffchange-inline\">wikimedia.org/mailman/listinfo/mediawiki</del>-<del class=\"diffchange diffchange-inline\">announce MediaWiki release mailing list]</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"> Steps 14\u201318, using RSEM for abundance estimation</ins>: <ins class=\"diffchange diffchange-inline\">40\u201360 min</ins></div></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">* [//www</del>.<del class=\"diffchange diffchange-inline\">mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"> Steps 19\u201325, differential expression analysis using EdgeR</ins>: <ins class=\"diffchange diffchange-inline\"><5 min</ins></div></td></tr>\n<tr><td colspan=\"2\"> </td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"> Step 26 (optional)</ins>: <ins class=\"diffchange diffchange-inline\">variable</ins></div></td></tr>\n<tr><td colspan=\"2\"> </td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"> Step 27, automation of required sections: 2\u20133 h</ins></div></td></tr>\n<tr><td colspan=\"2\"> </td><td class='diff-marker'>+</td><td class='diff-addedline'><div> </div></td></tr>\n<tr><td colspan=\"2\"> </td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">The time taken for each of the commands executed for the required sections of the tutorial, as reported during the</ins></div></td></tr>\n<tr><td colspan=\"2\"> </td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">automated execution via \u2018run_Trinity_edgeR_pipeline</ins>.<ins class=\"diffchange diffchange-inline\">pl\u2019 described above, and as run on a high</ins>-<ins class=\"diffchange diffchange-inline\">performance server at</ins></div></td></tr>\n<tr><td colspan=\"2\"> </td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">the Broad Institute (hardware specifications included), is provided in the Supplementary Note</ins>.</div></td></tr>\n\n<!-- diff cache key wiki-bwik:diff:version:1.11a:oldid:1:newid:2 -->\n"
}
}