pafq fastq.gz file details

Readset NameTotal seqsTotalbasesMx SeqSizeMin SeqSizeMax QualValMin QualVal
M6739216A_S1_L001_R1_0011,152,331244,997,37224132I#
M6739216A_S1_L001_R2_0011,152,331247,033,63124132I#
M6739322A_S2_L001_R1_001634,839151,380,02724132I#
M6739322A_S2_L001_R2_001634,839151,616,60324132I#
ME168012C_S11_L001_R1_001911,349215,231,94424132I#
ME168012C_S11_L001_R2_001911,349215,262,01824132I#
MG395078P_S12_L001_R1_001968,065228,830,72524132I#
MG395078P_S12_L001_R2_001968,065228,894,98424132I#
MG395416N_S9_L001_R1_0011,205,594283,875,75224132I#
MG395416N_S9_L001_R2_0011,205,594283,883,09624132I#
MG395417Q_S10_L001_R1_001927,312217,016,31124132I#
MG395417Q_S10_L001_R2_001927,312217,043,37824132I#
MG396050R_S8_L001_R1_001971,705229,638,52624132I#
MG396050R_S8_L001_R2_001971,705229,640,31024132I#
MG396838-1_S6_L001_R1_001855,643202,145,75924132I#
MG396838-1_S6_L001_R2_001855,643202,166,95624132I#
MG396838G-2_S7_L001_R1_001933,867220,900,74924132I#
MG396838G-2_S7_L001_R2_001933,867220,953,13424132I#
MG397296P_S20_L001_R1_001647,609152,269,72524132I#
MG397296P_S20_L001_R2_001647,609152,349,63024132I#
MG398073N_S5_L001_R1_001896,158210,036,88524132I#
MG398073N_S5_L001_R2_001896,158210,102,94924132I#
MG398768Y_S4_L001_R1_001985,301232,219,66524132I#
MG398768Y_S4_L001_R2_001985,301232,251,99524132I#
MG399601N_S19_L001_R1_001976,181229,522,40224132I#
MG399601N_S19_L001_R2_001976,181229,627,62124132I#
MG400034J_S14_L001_R1_0011,291,695304,405,64624132I#
MG400034J_S14_L001_R2_0011,291,695304,411,03224132I#
MG400228D_S13_L001_R1_0011,025,168241,209,66624132I#
MG400228D_S13_L001_R2_0011,025,168241,221,43424132I#
MG401586Y_S16_L001_R1_001622,051146,713,76624132I#
MG401586Y_S16_L001_R2_001622,051146,809,16724132I#
MG401595Q_S18_L001_R1_001722,087169,464,04924132I#
MG401595Q_S18_L001_R2_001722,087169,542,97824132I#
MG401669P_S17_L001_R1_001700,375164,765,02924132I#
MG401669P_S17_L001_R2_001700,375164,981,98324132I#
MG401672S_S15_L001_R1_001959,921225,882,58724132I#
MG401672S_S15_L001_R2_001959,921225,904,94624132I#
MG401829Y_S3_L001_R1_001865,776203,012,57824132I#
MG401829Y_S3_L001_R2_001865,776203,050,05624132I#
Undetermined_S0_L001_R1_001520,647123,266,67224132I#
Undetermined_S0_L001_R2_001520,647123,467,05224132I#

MultiQC Analysis of 2016-07-08 MiSeq trimmed data


MultiQC: a new program which summarises and contracts all the FastQC reports (given below)

FastQC Analysis of 2016-07-08 MiSeq trimmed data

M6739216A_S1_L001_R1_001_ | M6739216A_S1_L001_R2_001_
M6739322A_S2_L001_R1_001_ | M6739322A_S2_L001_R2_001_
ME168012C_S11_L001_R1_001_ | ME168012C_S11_L001_R2_001_
MG395078P_S12_L001_R1_001_ | MG395078P_S12_L001_R2_001_
MG395416N_S9_L001_R1_001_ | MG395416N_S9_L001_R2_001_
MG395417Q_S10_L001_R1_001_ | MG395417Q_S10_L001_R2_001_
MG396050R_S8_L001_R1_001_ | MG396050R_S8_L001_R2_001_
MG396838-1_S6_L001_R1_001_ | MG396838-1_S6_L001_R2_001_
MG396838G-2_S7_L001_R1_001_ | MG396838G-2_S7_L001_R2_001_
MG397296P_S20_L001_R1_001_ | MG397296P_S20_L001_R2_001_
MG398073N_S5_L001_R1_001_ | MG398073N_S5_L001_R2_001_
MG398768Y_S4_L001_R1_001_ | MG398768Y_S4_L001_R2_001_
MG399601N_S19_L001_R1_001_ | MG399601N_S19_L001_R2_001_
MG400034J_S14_L001_R1_001_ | MG400034J_S14_L001_R2_001_
MG400228D_S13_L001_R1_001_ | MG400228D_S13_L001_R2_001_
MG401586Y_S16_L001_R1_001_ | MG401586Y_S16_L001_R2_001_
MG401595Q_S18_L001_R1_001_ | MG401595Q_S18_L001_R2_001_
MG401669P_S17_L001_R1_001_ | MG401669P_S17_L001_R2_001_
MG401672S_S15_L001_R1_001_ | MG401672S_S15_L001_R2_001_
MG401829Y_S3_L001_R1_001_ | MG401829Y_S3_L001_R2_001_
Undetermined_S0_L001_R1_001_ | Undetermined_S0_L001_R2_001_