MultiQC Analysis of 2016-06-21 MiSeq trimmed data


MultiQC: a new program which summarises and contracts all the FastQC reports (given below)

FastQC Analysis of 2016-06-07 MiSeq trimmed data

JG269965G_R1 | JG269965G_R2
MG291789G_R1 | MG291789G_R2
MG386159C_R1 | MG386159C_R2
MG390975X_R1 | MG390975X_R2
MG390982M_R1 | MG390982M_R2
MG390984V_R1 | MG390984V_R2
MG391498T_R1 | MG391498T_R2
MG391770J_R1 | MG391770J_R2
MG391777G_R1 | MG391777G_R2
MG391778Z_R1 | MG391778Z_R2
MG391785X_R1 | MG391785X_R2
MG391787L_R1 | MG391787L_R2
MG391826E_R1 | MG391826E_R2
MG392174G_R1 | MG392174G_R2
MG393070J_R1 | MG393070J_R2
MG394203X_R1 | MG394203X_R2
MG394206S_R1 | MG394206S_R2
MG394535H_R1 | MG394535H_R2
MG394536Y_R1 | MG394536Y_R2
MG394658S_R1 | MG394658S_R2
MG394676V_R1 | MG394676V_R2
MU585039B_R1 | MU585039B_R2
Undetermined_R1 | Undetermined_R2

,

N50 and N90 stats from SPAdes assemblies of above reads
JG269965G N50: 258019 N90: 51087
MG291789G N50: 46376 N90: 7690
MG386159C N50: 257758 N90: 51087
MG390982M N50: 34284 N90: 6638
MG390984V N50: 50847 N90: 7811
MG391498T N50: 33264 N90: 7762
MG391770J N50: 34163 N90: 6638
MG391777G N50: 34284 N90: 7308
MG391778Z N50: 47189 N90: 7758
MG391785X N50: 44029 N90: 7758
MG391787L N50: 34284 N90: 7311
MG391826E N50: 53969 N90: 9241
MG392174G N50: 43173 N90: 7810
MG393070J N50: 52660 N90: 9751
MG394203X N50: 50241 N90: 9247
MG394206S N50: 46766 N90: 8453
MG394535H N50: 33928 N90: 7787
MG394536Y N50: 32898 N90: 6579
MG394658S N50: 51322 N90: 9217
MG394676V N50: 52660 N90: 9751
MU585039B N50: 46376 N90: 8446
Undetermined N50: 6038 N90: 76